Detailed information NTG0203912

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K06K5_RS13580
• Genome accession: NZ_CP017907
• Coordinates: 2887048..2888034 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K06K5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2882048..2893034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K06K5_RS13565 (K06K5_26600)	recA	2882593..2883636 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K06K5_RS13570 (K06K5_26610)	pncC	2883837..2884319 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K06K5_RS13575 (K06K5_26620)	mutS	2884404..2886965 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K06K5_RS13580 (K06K5_26630)	rpoS	2887048..2888034 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K06K5_RS13585 (K06K5_26640)	-	2888115..2889038 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K06K5_RS13590 (K06K5_26650)	-	2889052..2889678 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K06K5_RS13595 (K06K5_26660)	surE	2889678..2890454 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K06K5_RS13600 (K06K5_26670)	truD	2890454..2891497 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K06K5_RS13605 (K06K5_26680)	ispF	2891543..2892019 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K06K5_RS13610 (K06K5_26690)	ispD	2892034..2892741 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K06K5_RS13615 (K06K5_26700)	ftsB	2892743..2893024 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=203912 K06K5_RS13580 WP_005380887.1 2887048..2888034(-) (rpoS) [Vibrio alginolyticus strain K06K5]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=203912 K06K5_RS13580 WP_005380887.1 2887048..2888034(-) (rpoS) [Vibrio alginolyticus strain K06K5]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854