Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SPG_1754 Genome accession   CP001015
Coordinates   1689467..1690426 (+) Length   319 a.a.
NCBI ID   ACF55219.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684467..1695426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1748 - 1684667..1685431 (-) 765 ACF56092.1 conserved hypothetical protein -
  SPG_1749 - 1685435..1685878 (-) 444 ACF55336.1 transcriptional regulator, MarR family -
  SPG_1750 - 1686560..1686856 (-) 297 ACF56631.1 conserved hypothetical protein -
  SPG_1751 - 1686878..1687942 (-) 1065 ACF56167.1 glutamyl aminopeptidase -
  SPG_1752 - 1688062..1688184 (+) 123 ACF56344.1 hypothetical protein -
  SPG_1753 - 1688343..1689044 (+) 702 ACF55822.1 NAD dependent epimerase/dehydratase family protein -
  SPG_1754 ceuB 1689467..1690426 (+) 960 ACF55219.1 ABC transporter, permease protein Machinery gene
  SPG_1755 - 1690416..1691372 (+) 957 ACF56386.1 ABC transporter, permease protein -
  SPG_1756 - 1691369..1692121 (+) 753 ACF54895.1 ABC transporter, ATP-binding protein -
  SPG_1757 - 1692217..1693182 (+) 966 ACF56569.1 ABC transporter substrate binding protein -
  SPG_1758 - 1693407..1693649 (-) 243 ACF56684.1 conserved hypothetical protein -
  SPG_1759 - 1693649..1694371 (-) 723 ACF56234.1 ribosomal large subunit pseudouridine synthase B -
  SPG_1760 scpB 1694358..1694927 (-) 570 ACF56657.1 segregation and condensation protein B -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=20387 SPG_1754 ACF55219.1 1689467..1690426(+) (ceuB) [Streptococcus pneumoniae G54]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=20387 SPG_1754 ACF55219.1 1689467..1690426(+) (ceuB) [Streptococcus pneumoniae G54]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGGATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGAATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTAGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361