Detailed information NTG0203863

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K05K4_RS13750
• Genome accession: NZ_CP017902
• Coordinates: 2889330..2890316 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K05K4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2884330..2895316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K05K4_RS13735 (K05K4_26670)	recA	2884875..2885918 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K05K4_RS13740 (K05K4_26680)	pncC	2886119..2886601 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K05K4_RS13745 (K05K4_26690)	mutS	2886686..2889247 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K05K4_RS13750 (K05K4_26700)	rpoS	2889330..2890316 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K05K4_RS13755 (K05K4_26710)	-	2890397..2891320 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K05K4_RS13760 (K05K4_26720)	-	2891334..2891960 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K05K4_RS13765 (K05K4_26730)	surE	2891960..2892736 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K05K4_RS13770 (K05K4_26740)	truD	2892736..2893779 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K05K4_RS13775 (K05K4_26750)	ispF	2893825..2894301 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K05K4_RS13780 (K05K4_26760)	ispD	2894316..2895023 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K05K4_RS13785 (K05K4_26770)	ftsB	2895025..2895306 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=203863 K05K4_RS13750 WP_005380887.1 2889330..2890316(-) (rpoS) [Vibrio alginolyticus strain K05K4]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=203863 K05K4_RS13750 WP_005380887.1 2889330..2890316(-) (rpoS) [Vibrio alginolyticus strain K05K4]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854