Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K04M5_RS21695 Genome accession   NZ_CP017900
Coordinates   1144619..1145800 (+) Length   393 a.a.
NCBI ID   WP_017635350.1    Uniprot ID   A0AAW9AJM2
Organism   Vibrio alginolyticus strain K04M5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139619..1150800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M5_RS21690 (K04M5_42680) ylqF 1143337..1144281 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  K04M5_RS21695 (K04M5_42690) cqsA 1144619..1145800 (+) 1182 WP_017635350.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K04M5_RS21700 (K04M5_42700) cqsS 1145904..1147949 (-) 2046 WP_017821553.1 response regulator Regulator
  K04M5_RS21705 (K04M5_42710) - 1148313..1148930 (+) 618 WP_017635351.1 HAD family hydrolase -
  K04M5_RS21710 (K04M5_42720) - 1149020..1149568 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43651.91 Da        Isoelectric Point: 6.3840

>NTDB_id=203833 K04M5_RS21695 WP_017635350.1 1144619..1145800(+) (cqsA) [Vibrio alginolyticus strain K04M5]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPVFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=203833 K04M5_RS21695 WP_017635350.1 1144619..1145800(+) (cqsA) [Vibrio alginolyticus strain K04M5]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAATAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGACGATGAATCGAAACCTGTATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAACAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCATTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGTGGTAACGAGAGAAACACTGAGCGAGTCCGCGACTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCAGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment