Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K04M3_RS23070 Genome accession   NZ_CP017897
Coordinates   1468904..1470001 (-) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus isolate K04M3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463904..1475001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M3_RS23055 (K04M3_45280) - 1464474..1465532 (-) 1059 WP_005373588.1 HlyD family secretion protein -
  K04M3_RS23060 (K04M3_45290) slyA 1465568..1466023 (-) 456 WP_005373589.1 transcriptional regulator SlyA -
  K04M3_RS23065 (K04M3_45300) luxQ 1466328..1468904 (-) 2577 WP_054577765.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K04M3_RS23070 (K04M3_45310) luxP 1468904..1470001 (-) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  K04M3_RS23080 (K04M3_45320) - 1470332..1470649 (-) 318 WP_053304534.1 GIY-YIG nuclease family protein -
  K04M3_RS23085 (K04M3_45330) - 1470646..1471296 (-) 651 WP_005373594.1 YceH family protein -
  K04M3_RS23090 (K04M3_45340) - 1471462..1471686 (-) 225 WP_005385630.1 hypothetical protein -
  K04M3_RS23095 (K04M3_45350) - 1471907..1472221 (+) 315 WP_005373603.1 DUF496 family protein -
  K04M3_RS23100 (K04M3_45360) - 1472343..1473686 (+) 1344 WP_025767935.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=203786 K04M3_RS23070 WP_005385634.1 1468904..1470001(-) (luxP) [Vibrio alginolyticus isolate K04M3]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=203786 K04M3_RS23070 WP_005385634.1 1468904..1470001(-) (luxP) [Vibrio alginolyticus isolate K04M3]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAGAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAGGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACTGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment