Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | K04M1_RS14880 | Genome accession | NZ_CP017891 |
| Coordinates | 3109087..3109662 (-) | Length | 191 a.a. |
| NCBI ID | WP_017821732.1 | Uniprot ID | A0A2I3CBW9 |
| Organism | Vibrio alginolyticus strain K04M1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3104087..3114662
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K04M1_RS14855 (K04M1_28820) | aroB | 3104386..3105486 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| K04M1_RS14860 (K04M1_28830) | aroK | 3105519..3106037 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| K04M1_RS14865 (K04M1_28840) | pilQ | 3106225..3107970 (-) | 1746 | WP_005382765.1 | type IV pilus secretin PilQ | Machinery gene |
| K04M1_RS14870 (K04M1_28850) | pilP | 3107996..3108511 (-) | 516 | WP_086047068.1 | pilus assembly protein PilP | Machinery gene |
| K04M1_RS14875 (K04M1_28860) | pilO | 3108501..3109094 (-) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| K04M1_RS14880 (K04M1_28870) | pilN | 3109087..3109662 (-) | 576 | WP_017821732.1 | PilN domain-containing protein | Machinery gene |
| K04M1_RS14885 (K04M1_28880) | pilM | 3109646..3110662 (-) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| K04M1_RS14890 (K04M1_28890) | - | 3110807..3113368 (+) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
| K04M1_RS14895 (K04M1_28900) | oxyR | 3113422..3114333 (-) | 912 | WP_005381326.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22349.86 Da Isoelectric Point: 7.4658
>NTDB_id=203725 K04M1_RS14880 WP_017821732.1 3109087..3109662(-) (pilN) [Vibrio alginolyticus strain K04M1]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG
Nucleotide
Download Length: 576 bp
>NTDB_id=203725 K04M1_RS14880 WP_017821732.1 3109087..3109662(-) (pilN) [Vibrio alginolyticus strain K04M1]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGAGC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.199 |
100 |
0.822 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
92.67 |
0.586 |