Detailed information NTG0203716

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K04M1_RS13745
• Genome accession: NZ_CP017891
• Coordinates: 2888878..2889864 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K04M1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2883878..2894864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K04M1_RS13730 (K04M1_26630)	recA	2884423..2885466 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K04M1_RS13735 (K04M1_26640)	pncC	2885667..2886149 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K04M1_RS13740 (K04M1_26650)	mutS	2886234..2888795 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K04M1_RS13745 (K04M1_26660)	rpoS	2888878..2889864 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K04M1_RS13750 (K04M1_26670)	-	2889945..2890868 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K04M1_RS13755 (K04M1_26680)	-	2890882..2891508 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K04M1_RS13760 (K04M1_26690)	surE	2891508..2892284 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K04M1_RS13765 (K04M1_26700)	truD	2892284..2893327 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K04M1_RS13770 (K04M1_26710)	ispF	2893373..2893849 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K04M1_RS13775 (K04M1_26720)	ispD	2893864..2894571 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K04M1_RS13780 (K04M1_26730)	ftsB	2894573..2894854 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=203716 K04M1_RS13745 WP_005380887.1 2888878..2889864(-) (rpoS) [Vibrio alginolyticus strain K04M1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=203716 K04M1_RS13745 WP_005380887.1 2888878..2889864(-) (rpoS) [Vibrio alginolyticus strain K04M1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854