Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SMA_2048 Genome accession   HE613569
Coordinates   1991931..1993232 (-) Length   433 a.a.
NCBI ID   CCF03339.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986931..1998232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_2041 - 1988036..1988323 (-) 288 Protein_2040 Hypothetical protein -
  SMA_2042 - 1988270..1988443 (-) 174 Protein_2041 Hypothetical protein -
  SMA_2043 - 1988499..1989179 (-) 681 CCF03334.1 Transposase -
  SMA_2044 - 1989563..1990513 (-) 951 CCF03335.1 Magnesium transporter, CorA family -
  SMA_2045 - 1990644..1991024 (-) 381 CCF03336.1 Hypothetical protein -
  SMA_2046 - 1991092..1991196 (-) 105 CCF03337.1 Hypothetical protein -
  SMA_2047 - 1991311..1991805 (-) 495 CCF03338.1 Carbonic anhydrase -
  SMA_2048 radA 1991931..1993232 (-) 1302 CCF03339.1 DNA repair protein RadA Machinery gene
  SMA_2049 - 1993310..1993812 (-) 503 CCF03340.1 Hypothetical protein -
  SMA_2050 dut 1993843..1994289 (-) 447 CCF03341.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase -
  SMA_2051 - 1994383..1995376 (-) 994 Protein_2050 Hypothetical protein -
  SMA_2052 - 1995564..1996331 (-) 768 CCF03343.1 Hypothetical protein -
  SMA_2053 gpsA 1996526..1997542 (+) 1017 CCF03344.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 47170.03 Da        Isoelectric Point: 5.2215

>NTDB_id=20371 SMA_2048 CCF03339.1 1991931..1993232(-) (radA) [Streptococcus macedonicus ACA-DC 198]
MGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIG
KSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGNIDNEFYLYAETNMQAIRAQIEQIQPDFLIIDSIQTIMSPDI
SGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEI
GIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEK
RCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKV
YAPKNSLSGIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=20371 SMA_2048 CCF03339.1 1991931..1993232(-) (radA) [Streptococcus macedonicus ACA-DC 198]
TTGGGTCGTTGTCCGAATTGTTCGTCCTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGT
TAGTTTGACGGGTGAAAAGAGTAAACCAACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGACA
TGGATGAATTTAACCGCGTGCTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGA
AAATCAACTCTTCTTTTGCAGGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGC
AGAGCAGATTAAACTACGTAGTGAGCGTCTCGGCAACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAG
CCATTCGCGCACAGATTGAGCAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACAATTATGAGCCCCGATATT
TCTGGGGTTCAAGGGTCGGTATCACAAGTACGTGAAGTGACCGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGC
AACCTTTATTGTTGGTCACGTGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGC
TTTATTTTGAAGGGGAACGTCATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATC
GGCATTTTTGAAATGCAATCTGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGATGG
TGCAACGGGGTCAGCTATCGTGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTACAAGCTTTGGTAACGCCGA
CAGTCTTTGGAAATGCCAAACGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAA
CGTTGTGGACTTTTATTGCAAAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGA
TTTGGCAGTAGCGGTAGCCATTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTG
GTTTGACAGGCGAAATTCGTCGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTT
TATGCTCCTAAAAACTCACTGTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGT
CCTCAAACAAGTTTTTGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(340-405)

AAA domain (AAA_25)

(49-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.453

100

0.885
  radA Streptococcus pneumoniae D39

88.453

100

0.885
  radA Streptococcus pneumoniae R6

88.453

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.453

100

0.885
  radA Streptococcus mitis SK321

88.453

100

0.885
  radA Streptococcus mitis NCTC 12261

88.222

100

0.882
  radA Bacillus subtilis subsp. subtilis str. 168

61.894

100

0.619

Multiple sequence alignment