Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K04M1_RS01475 Genome accession   NZ_CP017891
Coordinates   295710..296717 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain K04M1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 290710..301717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M1_RS01450 (K04M1_02860) - 291266..292093 (+) 828 WP_020835168.1 DUF5718 family protein -
  K04M1_RS01455 (K04M1_02870) - 292277..292501 (+) 225 WP_029857381.1 hypothetical protein -
  K04M1_RS01460 (K04M1_02880) hslU 292915..294246 (-) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -
  K04M1_RS01465 (K04M1_02890) hslV 294270..294821 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  K04M1_RS01470 (K04M1_02900) ftsN 294937..295485 (-) 549 WP_017820300.1 cell division protein FtsN -
  K04M1_RS01475 (K04M1_02920) cytR 295710..296717 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  K04M1_RS01480 (K04M1_02930) priA 297042..299243 (-) 2202 WP_086046495.1 primosomal protein N' -
  K04M1_RS01490 (K04M1_02940) rpmE 299540..299761 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  K04M1_RS01495 (K04M1_02950) rpsJ 300218..300529 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  K04M1_RS01500 (K04M1_02960) rplC 300544..301173 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=203693 K04M1_RS01475 WP_005379543.1 295710..296717(-) (cytR) [Vibrio alginolyticus strain K04M1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=203693 K04M1_RS01475 WP_005379543.1 295710..296717(-) (cytR) [Vibrio alginolyticus strain K04M1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCATTAATGAACCCAGAAAA
AGTATCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGC
ATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGTTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCGGATGGAATGCTACTGCTTGGCACAGATCTACCGTTTGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCTGAGCCACCAACGGCC
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCGCCGTTGACCACTATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTTGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTTTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCTGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment