Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   K01M1_RS21805 Genome accession   NZ_CP017890
Coordinates   1129040..1131085 (-) Length   681 a.a.
NCBI ID   WP_017821553.1    Uniprot ID   A0A2I3CQX1
Organism   Vibrio alginolyticus strain K01M1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124040..1136085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K01M1_RS21795 (K01M1_42350) ylqF 1126473..1127417 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  K01M1_RS21800 (K01M1_42360) cqsA 1127755..1128936 (+) 1182 WP_017635350.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K01M1_RS21805 (K01M1_42370) cqsS 1129040..1131085 (-) 2046 WP_017821553.1 response regulator Regulator
  K01M1_RS21810 (K01M1_42380) - 1131449..1132066 (+) 618 WP_017635351.1 HAD family hydrolase -
  K01M1_RS21815 (K01M1_42390) - 1132156..1132704 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  K01M1_RS21820 (K01M1_42400) - 1132976..1134100 (+) 1125 WP_017821552.1 acyl-CoA desaturase -
  K01M1_RS21825 (K01M1_42410) dcuC 1134460..1135827 (+) 1368 WP_005376528.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78202.74 Da        Isoelectric Point: 5.2226

>NTDB_id=203687 K01M1_RS21805 WP_017821553.1 1129040..1131085(-) (cqsS) [Vibrio alginolyticus strain K01M1]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSVHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVTEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDANQVLKKKEYEFEFDLIFVDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKPTIERLLYDSSYVSTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=203687 K01M1_RS21805 WP_017821553.1 1129040..1131085(-) (cqsS) [Vibrio alginolyticus strain K01M1]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTACCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATCGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAGGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTGACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGTTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGATTTGCCATAT
CGCTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACATTACTTAAATACGTTATGTATAACCTCTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGCATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACTGGCAAATCAGGAA
GTTATGGTTTGGGTCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACGTTAACTTTCCCACTAACGACATCTGATACCGTTACTGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACGATTTTAGATGCCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTGTCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATAGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGTAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACCAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTATCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTTGATCTCATTCTGATGGATA
TCGAAATGCCAATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCACATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGTTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

50.073

100

0.504

Multiple sequence alignment