Detailed information NTG0203667

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K01M1_RS13710
• Genome accession: NZ_CP017889
• Coordinates: 2884054..2885040 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K01M1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2879054..2890040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K01M1_RS13695 (K01M1_26480)	recA	2879599..2880642 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K01M1_RS13700 (K01M1_26490)	pncC	2880843..2881325 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K01M1_RS13705 (K01M1_26500)	mutS	2881410..2883971 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K01M1_RS13710 (K01M1_26510)	rpoS	2884054..2885040 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K01M1_RS13715 (K01M1_26520)	-	2885121..2886044 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K01M1_RS13720 (K01M1_26530)	-	2886058..2886684 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K01M1_RS13725 (K01M1_26540)	surE	2886684..2887460 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K01M1_RS13730 (K01M1_26550)	truD	2887460..2888503 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K01M1_RS13735 (K01M1_26560)	ispF	2888549..2889025 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K01M1_RS13740 (K01M1_26570)	ispD	2889040..2889747 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K01M1_RS13745 (K01M1_26580)	ftsB	2889749..2890030 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=203667 K01M1_RS13710 WP_005380887.1 2884054..2885040(-) (rpoS) [Vibrio alginolyticus strain K01M1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=203667 K01M1_RS13710 WP_005380887.1 2884054..2885040(-) (rpoS) [Vibrio alginolyticus strain K01M1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854