Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K01M1_RS11060 Genome accession   NZ_CP017889
Coordinates   2328594..2330000 (-) Length   468 a.a.
NCBI ID   WP_005380768.1    Uniprot ID   A0AAW9BFV3
Organism   Vibrio alginolyticus strain K01M1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2323594..2335000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K01M1_RS11025 (K01M1_21310) moaE 2324099..2324554 (-) 456 WP_025767210.1 molybdopterin synthase catalytic subunit MoaE -
  K01M1_RS11030 (K01M1_21320) moaD 2324556..2324813 (-) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  K01M1_RS11035 (K01M1_21330) moaC 2324810..2325289 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  K01M1_RS11040 (K01M1_21340) moaB 2325316..2325828 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  K01M1_RS11045 (K01M1_21350) moaA 2325930..2326919 (-) 990 WP_017636052.1 GTP 3',8-cyclase MoaA -
  K01M1_RS11050 (K01M1_21360) - 2327218..2328114 (+) 897 WP_025767209.1 YvcK family protein -
  K01M1_RS11055 (K01M1_21370) luxU 2328253..2328597 (-) 345 WP_025767208.1 quorum-sensing phosphorelay protein LuxU -
  K01M1_RS11060 (K01M1_21380) luxO 2328594..2330000 (-) 1407 WP_005380768.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  K01M1_RS11065 (K01M1_21390) uvrB 2330292..2332322 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52094.70 Da        Isoelectric Point: 6.2547

>NTDB_id=203657 K01M1_RS11060 WP_005380768.1 2328594..2330000(-) (luxO) [Vibrio alginolyticus strain K01M1]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=203657 K01M1_RS11060 WP_005380768.1 2328594..2330000(-) (luxO) [Vibrio alginolyticus strain K01M1]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACAGCGCATGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGTGCTGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAAGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829

Multiple sequence alignment