Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | K01M1_RS06555 | Genome accession | NZ_CP017889 |
| Coordinates | 1372639..1374060 (-) | Length | 473 a.a. |
| NCBI ID | WP_086046658.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain K01M1 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1372209..1412101 | 1372639..1374060 | within | 0 |
Gene organization within MGE regions
Location: 1372209..1412101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K01M1_RS06550 (K01M1_12780) | - | 1372209..1372583 (-) | 375 | WP_005397786.1 | CidA/LrgA family protein | - |
| K01M1_RS06555 (K01M1_12790) | sbcB | 1372639..1374060 (-) | 1422 | WP_086046658.1 | exodeoxyribonuclease I | Machinery gene |
| K01M1_RS06560 (K01M1_12800) | - | 1374241..1375458 (+) | 1218 | WP_086046659.1 | tyrosine-type recombinase/integrase | - |
| K01M1_RS06565 (K01M1_12810) | - | 1375581..1376108 (+) | 528 | WP_086046660.1 | hypothetical protein | - |
| K01M1_RS06570 (K01M1_12820) | - | 1376111..1376668 (+) | 558 | WP_086046661.1 | hypothetical protein | - |
| K01M1_RS06575 (K01M1_12830) | - | 1376816..1377571 (+) | 756 | WP_086046662.1 | hypothetical protein | - |
| K01M1_RS06580 (K01M1_12840) | - | 1377645..1378301 (+) | 657 | WP_086046663.1 | TauD/TfdA family dioxygenase | - |
| K01M1_RS06585 (K01M1_12850) | - | 1378312..1379283 (+) | 972 | WP_086046664.1 | hypothetical protein | - |
| K01M1_RS06590 (K01M1_12860) | - | 1379423..1380127 (+) | 705 | WP_086046665.1 | Abi-alpha family protein | - |
| K01M1_RS06595 (K01M1_12870) | - | 1380199..1380504 (-) | 306 | WP_086046666.1 | helix-turn-helix transcriptional regulator | - |
| K01M1_RS25270 (K01M1_12880) | - | 1380545..1380703 (-) | 159 | WP_020333055.1 | hypothetical protein | - |
| K01M1_RS06600 (K01M1_12890) | - | 1380801..1381043 (-) | 243 | WP_086046667.1 | hypothetical protein | - |
| K01M1_RS06605 (K01M1_12900) | - | 1381198..1381470 (-) | 273 | WP_025766807.1 | hypothetical protein | - |
| K01M1_RS06610 (K01M1_12910) | - | 1381670..1382866 (+) | 1197 | WP_157664331.1 | BRCT domain-containing protein | - |
| K01M1_RS06615 (K01M1_12920) | - | 1382881..1383567 (-) | 687 | WP_086046669.1 | LexA family protein | - |
| K01M1_RS06620 (K01M1_12930) | - | 1383673..1383927 (+) | 255 | WP_086046670.1 | hypothetical protein | - |
| K01M1_RS06625 (K01M1_12940) | - | 1383967..1384515 (+) | 549 | WP_053807278.1 | toxin YdaT family protein | - |
| K01M1_RS25665 (K01M1_12950) | - | 1384575..1384706 (+) | 132 | WP_255201246.1 | hypothetical protein | - |
| K01M1_RS25525 (K01M1_12960) | - | 1384703..1385488 (+) | 786 | WP_231970820.1 | hypothetical protein | - |
| K01M1_RS06640 (K01M1_12970) | - | 1385485..1386216 (+) | 732 | WP_086046671.1 | ATP-binding protein | - |
| K01M1_RS06645 (K01M1_12980) | - | 1386217..1386798 (+) | 582 | WP_086046672.1 | hypothetical protein | - |
| K01M1_RS06650 (K01M1_12990) | - | 1387065..1388300 (+) | 1236 | WP_086046673.1 | AAA family ATPase | - |
| K01M1_RS06655 (K01M1_13000) | - | 1388293..1388811 (+) | 519 | WP_050450732.1 | hypothetical protein | - |
| K01M1_RS06660 (K01M1_13010) | - | 1389042..1389806 (+) | 765 | WP_031812313.1 | hypothetical protein | - |
| K01M1_RS06665 (K01M1_13020) | - | 1389966..1390253 (+) | 288 | WP_031812312.1 | hypothetical protein | - |
| K01M1_RS06670 (K01M1_13030) | - | 1390219..1390677 (+) | 459 | WP_086046674.1 | hypothetical protein | - |
| K01M1_RS06675 (K01M1_13040) | - | 1390719..1390904 (+) | 186 | WP_025766795.1 | hypothetical protein | - |
| K01M1_RS06680 (K01M1_13050) | - | 1391232..1392446 (+) | 1215 | WP_086046675.1 | tyrosine-type recombinase/integrase | - |
| K01M1_RS06685 (K01M1_13060) | - | 1392895..1393464 (+) | 570 | WP_025632836.1 | terminase small subunit | - |
| K01M1_RS06690 (K01M1_13070) | - | 1393475..1395409 (+) | 1935 | WP_086046676.1 | terminase gpA endonuclease subunit | - |
| K01M1_RS06695 (K01M1_13080) | - | 1395403..1395930 (+) | 528 | WP_025632833.1 | hypothetical protein | - |
| K01M1_RS06700 (K01M1_13090) | - | 1395930..1397489 (+) | 1560 | WP_086046677.1 | phage portal protein | - |
| K01M1_RS06705 (K01M1_13100) | - | 1397455..1399428 (+) | 1974 | WP_086046678.1 | phage major capsid protein | - |
| K01M1_RS06710 (K01M1_13110) | - | 1399488..1399679 (+) | 192 | WP_025632827.1 | hypothetical protein | - |
| K01M1_RS06715 (K01M1_13120) | - | 1399672..1399950 (+) | 279 | WP_025766788.1 | ATP-binding sugar transporter from pro-phage family protein | - |
| K01M1_RS06720 (K01M1_13130) | - | 1399947..1400579 (+) | 633 | WP_086046679.1 | phage tail protein | - |
| K01M1_RS06725 (K01M1_13140) | gpU | 1400569..1401015 (+) | 447 | WP_025766786.1 | phage tail terminator protein | - |
| K01M1_RS06730 (K01M1_13150) | - | 1401018..1401515 (+) | 498 | WP_086046680.1 | phage tail tube protein | - |
| K01M1_RS06735 (K01M1_13160) | - | 1401518..1401997 (+) | 480 | WP_086046681.1 | phage minor tail protein G | - |
| K01M1_RS06740 (K01M1_13170) | - | 1402021..1402353 (+) | 333 | WP_025632816.1 | phage tail assembly protein T | - |
| K01M1_RS06745 (K01M1_13180) | - | 1402334..1404565 (+) | 2232 | WP_086046682.1 | hypothetical protein | - |
| K01M1_RS06750 (K01M1_13190) | - | 1404572..1405048 (+) | 477 | WP_086046683.1 | hypothetical protein | - |
| K01M1_RS06755 (K01M1_13200) | - | 1405038..1406936 (+) | 1899 | WP_086046684.1 | sialate O-acetylesterase | - |
| K01M1_RS06760 (K01M1_13210) | - | 1406939..1407622 (+) | 684 | WP_025766780.1 | hypothetical protein | - |
| K01M1_RS06765 (K01M1_13220) | - | 1407628..1408164 (+) | 537 | WP_005376972.1 | DUF1833 family protein | - |
| K01M1_RS06770 (K01M1_13230) | - | 1408164..1408589 (+) | 426 | WP_086046685.1 | phage tail protein | - |
| K01M1_RS06775 (K01M1_13240) | - | 1408549..1411362 (+) | 2814 | WP_086046686.1 | host specificity factor TipJ family phage tail protein | - |
| K01M1_RS06780 (K01M1_13250) | - | 1411388..1412101 (-) | 714 | WP_025766776.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54341.54 Da Isoelectric Point: 4.7710
>NTDB_id=203654 K01M1_RS06555 WP_086046658.1 1372639..1374060(-) (sbcB) [Vibrio alginolyticus strain K01M1]
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=203654 K01M1_RS06555 WP_086046658.1 1372639..1374060(-) (sbcB) [Vibrio alginolyticus strain K01M1]
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.493 |
100 |
0.795 |