Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BIZ35_RS01575 Genome accession   NZ_CP017888
Coordinates   334371..336185 (+) Length   604 a.a.
NCBI ID   WP_014095725.1    Uniprot ID   A0AAU7WDP7
Organism   Heyndrickxia coagulans strain BC-HY1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 329371..341185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ35_RS01550 (BIZ35_01550) - 330192..331133 (+) 942 WP_013858788.1 ABC transporter ATP-binding protein -
  BIZ35_RS01555 (BIZ35_01555) spxA 331413..331808 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  BIZ35_RS01565 (BIZ35_01565) mecA 332168..332827 (+) 660 WP_026683767.1 adaptor protein MecA -
  BIZ35_RS01570 (BIZ35_01570) - 333119..334303 (+) 1185 WP_230090526.1 competence protein CoiA -
  BIZ35_RS01575 (BIZ35_01575) pepF 334371..336185 (+) 1815 WP_014095725.1 oligoendopeptidase F Regulator
  BIZ35_RS01580 (BIZ35_01580) - 336577..336768 (-) 192 WP_017553961.1 hypothetical protein -
  BIZ35_RS01585 (BIZ35_01585) - 337059..337916 (-) 858 WP_017553962.1 ClpXP adapter SpxH family protein -
  BIZ35_RS01590 (BIZ35_01590) - 337913..338314 (-) 402 WP_013858794.1 globin -
  BIZ35_RS01595 (BIZ35_01595) - 338753..339547 (-) 795 WP_071451802.1 lytic transglycosylase domain-containing protein -
  BIZ35_RS01600 (BIZ35_01600) - 339544..340128 (-) 585 WP_035189769.1 CYTH domain-containing protein -
  BIZ35_RS01605 (BIZ35_01605) - 340265..340648 (+) 384 WP_071451803.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69499.07 Da        Isoelectric Point: 5.1940

>NTDB_id=203605 BIZ35_RS01575 WP_014095725.1 334371..336185(+) (pepF) [Heyndrickxia coagulans strain BC-HY1]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYQAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALSANHIPEKVYDQLVETVNKHLGLLHRYVALRKKALQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYYGTDTAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMTSPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=203605 BIZ35_RS01575 WP_014095725.1 334371..336185(+) (pepF) [Heyndrickxia coagulans strain BC-HY1]
ATGGAAAATGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACCAAGCAGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATAGACAGCAAAGCAAAAAGCCTTGC
TGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTGAACAATGCCGACCT
TGAGTTCCCGACCGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCAACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCACATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTTGGTTTGCTGCATCGGTATGTTG
CACTGCGCAAAAAAGCGCTGCAGCTTGATGAAGTGCATATGTATGATTTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTAACATATGAAAAAGCGAAAGAGATTGTGCTTGACGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
ACAGGCGTTTGAAAACCGCTGGATTGATGTGGTGGAAAATAAGGGAAAACGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCTATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCACTATTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTATTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGTTGACGGCGGAACTTTTAACAGATGAGTATTATAAGCTGAACCAAAAATACTATGGTACGGATACCGC
CATTGATCAGGAAATCGGGCTAGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTATATCGGCTATTTG
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGACGTCACCCCAACCGGTCGAAGA
TGCGTTAAAAGTTTTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.013

0.5

Multiple sequence alignment