Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | BLD36_RS03825 | Genome accession | NZ_CP017878 |
| Coordinates | 721846..722790 (-) | Length | 314 a.a. |
| NCBI ID | WP_002777230.1 | Uniprot ID | A0A3Z8C350 |
| Organism | Campylobacter coli strain BG2108 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 718204..749982 | 721846..722790 | within | 0 |
Gene organization within MGE regions
Location: 718204..749982
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLD36_RS03805 (BLD36_03805) | rfaD | 718204..719157 (+) | 954 | WP_057031145.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| BLD36_RS03810 (BLD36_03810) | rfaE1 | 719150..720535 (+) | 1386 | WP_038853886.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| BLD36_RS03815 (BLD36_03815) | gmhA | 720532..721092 (+) | 561 | WP_002831598.1 | D-sedoheptulose 7-phosphate isomerase | - |
| BLD36_RS03820 (BLD36_03820) | - | 721092..721853 (+) | 762 | WP_002826801.1 | glycosyltransferase family 25 protein | - |
| BLD36_RS03825 (BLD36_03825) | waaF | 721846..722790 (-) | 945 | WP_002777230.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| BLD36_RS03830 (BLD36_03830) | - | 722849..723670 (+) | 822 | WP_032685539.1 | glycosyltransferase family 2 protein | - |
| BLD36_RS10030 | - | 724011..724157 (-) | 147 | WP_168848228.1 | hypothetical protein | - |
| BLD36_RS09915 (BLD36_03835) | - | 724154..724390 (-) | 237 | WP_255296982.1 | alpha-2,3-sialyltransferase | - |
| BLD36_RS10035 | - | 724398..724711 (-) | 314 | Protein_749 | alpha-2,3-sialyltransferase | - |
| BLD36_RS03845 (BLD36_03845) | - | 724839..725639 (+) | 801 | WP_002777224.1 | class I SAM-dependent methyltransferase | - |
| BLD36_RS03850 (BLD36_03850) | - | 725720..726655 (+) | 936 | WP_002777223.1 | glycosyltransferase family 2 protein | - |
| BLD36_RS03855 (BLD36_03855) | - | 726643..727854 (+) | 1212 | WP_002799165.1 | glycosyltransferase family 8 protein | - |
| BLD36_RS03860 (BLD36_03860) | - | 727841..728896 (-) | 1056 | WP_071306705.1 | glycosyltransferase family 4 protein | - |
| BLD36_RS03865 (BLD36_03865) | - | 728893..730440 (-) | 1548 | WP_002777220.1 | glycosyltransferase | - |
| BLD36_RS03870 (BLD36_03870) | - | 730437..731324 (-) | 888 | WP_002786301.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| BLD36_RS03875 (BLD36_03875) | waaC | 731317..732345 (-) | 1029 | WP_002790129.1 | lipopolysaccharide heptosyltransferase I | - |
| BLD36_RS03880 (BLD36_03880) | - | 732410..733201 (+) | 792 | WP_032684756.1 | 3'-5' exonuclease | - |
| BLD36_RS03885 (BLD36_03885) | galE | 733258..734244 (+) | 987 | WP_002777216.1 | UDP-glucose 4-epimerase GalE | - |
| BLD36_RS03890 (BLD36_03890) | - | 734238..735938 (+) | 1701 | WP_002806630.1 | ABC transporter ATP-binding protein | - |
| BLD36_RS03895 (BLD36_03895) | - | 735935..737011 (+) | 1077 | WP_002787737.1 | glycosyltransferase | - |
| BLD36_RS03900 (BLD36_03900) | - | 737004..737933 (+) | 930 | WP_002777213.1 | glycosyltransferase family 2 protein | - |
| BLD36_RS03905 (BLD36_03905) | - | 737921..739018 (+) | 1098 | WP_002777212.1 | glycosyltransferase | - |
| BLD36_RS03910 (BLD36_03910) | - | 739022..741166 (+) | 2145 | WP_002780646.1 | STT3 domain-containing protein | - |
| BLD36_RS03915 (BLD36_03915) | pglA | 741178..742308 (+) | 1131 | WP_002777209.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| BLD36_RS03920 (BLD36_03920) | pglC | 742301..742903 (+) | 603 | WP_002777206.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| BLD36_RS03925 (BLD36_03925) | pglD | 742890..743477 (+) | 588 | WP_002780649.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| BLD36_RS03930 (BLD36_03930) | pglE | 743632..744792 (+) | 1161 | WP_002780652.1 | UDP-N-acetylbacillosamine transaminase | - |
| BLD36_RS03935 (BLD36_03935) | pglF | 744795..746567 (+) | 1773 | WP_002777199.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| BLD36_RS03940 (BLD36_03940) | - | 746782..747174 (+) | 393 | WP_002777196.1 | chemotaxis response regulator CheY | - |
| BLD36_RS03945 (BLD36_03945) | - | 747188..748036 (+) | 849 | WP_002777195.1 | 50S ribosomal protein L11 methyltransferase | - |
| BLD36_RS03950 (BLD36_03950) | ftsH | 748036..749982 (+) | 1947 | WP_002780655.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 314 a.a. Molecular weight: 36065.60 Da Isoelectric Point: 10.2686
>NTDB_id=203501 BLD36_RS03825 WP_002777230.1 721846..722790(-) (waaF) [Campylobacter coli strain BG2108]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT
Nucleotide
Download Length: 945 bp
>NTDB_id=203501 BLD36_RS03825 WP_002777230.1 721846..722790(-) (waaF) [Campylobacter coli strain BG2108]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
83.067 |
99.682 |
0.828 |