Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BLD36_RS02430 Genome accession   NZ_CP017878
Coordinates   450180..451361 (+) Length   393 a.a.
NCBI ID   WP_052785740.1    Uniprot ID   -
Organism   Campylobacter coli strain BG2108     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 445180..456361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD36_RS02415 (BLD36_02415) - 445506..446345 (+) 840 WP_052785738.1 glycosyltransferase family 2 protein -
  BLD36_RS09790 - 446342..448081 (+) 1740 WP_229022039.1 hypothetical protein -
  BLD36_RS02425 (BLD36_02425) - 448156..450183 (+) 2028 WP_052785739.1 capsular polysaccharide biosynthesis protein -
  BLD36_RS02430 (BLD36_02430) kpsS 450180..451361 (+) 1182 WP_052785740.1 capsule biosynthesis protein Regulator
  BLD36_RS02435 (BLD36_02435) - 451432..452553 (+) 1122 WP_002789589.1 DUF829 domain-containing protein -
  BLD36_RS02440 (BLD36_02440) - 452550..453920 (+) 1371 WP_002783822.1 cytochrome P450 -
  BLD36_RS02445 (BLD36_02445) - 453917..454339 (+) 423 WP_002783824.1 hypothetical protein -
  BLD36_RS02450 (BLD36_02450) acpS 454342..454689 (-) 348 WP_002798777.1 holo-ACP synthase -
  BLD36_RS02455 (BLD36_02455) fliL 454689..455225 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46393.12 Da        Isoelectric Point: 10.0255

>NTDB_id=203493 BLD36_RS02430 WP_052785740.1 450180..451361(+) (kpsS) [Campylobacter coli strain BG2108]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINGLSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=203493 BLD36_RS02430 WP_052785740.1 450180..451361(+) (kpsS) [Campylobacter coli strain BG2108]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAACGGAGGAGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGGGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.755

99.746

0.875

Multiple sequence alignment