Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD43_RS08955 Genome accession   NZ_CP017875
Coordinates   1718042..1718353 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain ZV1224     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713042..1723353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS08935 (BLD43_08935) ctsE 1713909..1715471 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  BLD43_RS08940 (BLD43_08940) - 1715464..1716060 (-) 597 WP_002779313.1 CDC27 family protein -
  BLD43_RS08945 (BLD43_08945) ctsP 1716057..1716653 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  BLD43_RS08950 (BLD43_08950) ctsD 1716646..1718064 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD43_RS08955 (BLD43_08955) ctsR 1718042..1718353 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  BLD43_RS08960 (BLD43_08960) nifJ 1718377..1721937 (-) 3561 WP_002781162.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD43_RS08965 (BLD43_08965) - 1722041..1722679 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=203485 BLD43_RS08955 WP_002779316.1 1718042..1718353(-) (ctsR) [Campylobacter coli strain ZV1224]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203485 BLD43_RS08955 WP_002779316.1 1718042..1718353(-) (ctsR) [Campylobacter coli strain ZV1224]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment