Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | BLD39_RS03770 | Genome accession | NZ_CP017871 |
| Coordinates | 714412..715371 (-) | Length | 319 a.a. |
| NCBI ID | WP_002790123.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain BP3183 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 709412..720371
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLD39_RS03740 (BLD39_03740) | - | 710377..710577 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| BLD39_RS03745 (BLD39_03745) | - | 710607..710906 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| BLD39_RS03750 (BLD39_03750) | - | 710983..711546 (+) | 564 | WP_025431507.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| BLD39_RS03755 (BLD39_03755) | rfaD | 711543..712496 (+) | 954 | WP_002787746.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| BLD39_RS03760 (BLD39_03760) | rfaE1 | 712489..713874 (+) | 1386 | WP_002790121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| BLD39_RS03765 (BLD39_03765) | gmhA | 713871..714431 (+) | 561 | WP_002796916.1 | D-sedoheptulose 7-phosphate isomerase | - |
| BLD39_RS03770 (BLD39_03770) | waaF | 714412..715371 (-) | 960 | WP_002790123.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| BLD39_RS03775 (BLD39_03775) | - | 715430..716248 (+) | 819 | WP_002780620.1 | glycosyltransferase family 2 protein | - |
| BLD39_RS03780 (BLD39_03780) | - | 716344..717387 (+) | 1044 | WP_168207695.1 | polysaccharide pyruvyl transferase family protein | - |
| BLD39_RS03790 (BLD39_03790) | - | 717874..718218 (+) | 345 | WP_002780624.1 | hypothetical protein | - |
| BLD39_RS09875 (BLD39_03795) | - | 718228..718416 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| BLD39_RS03800 (BLD39_03800) | - | 718421..719197 (+) | 777 | WP_071304909.1 | sulfatase-like hydrolase/transferase | - |
| BLD39_RS03805 (BLD39_03805) | - | 719294..719566 (+) | 273 | WP_002780626.1 | hypothetical protein | - |
| BLD39_RS09880 | - | 719752..719886 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36735.26 Da Isoelectric Point: 10.3041
>NTDB_id=203423 BLD39_RS03770 WP_002790123.1 714412..715371(-) (waaF) [Campylobacter coli strain BP3183]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=203423 BLD39_RS03770 WP_002790123.1 714412..715371(-) (waaF) [Campylobacter coli strain BP3183]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.671 |
100 |
0.947 |