Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   BLD42_RS03500 Genome accession   NZ_CP017860
Coordinates   642990..643427 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain TS1218     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637990..648427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD42_RS10070 - 638615..639637 (+) 1023 WP_251817548.1 sensor histidine kinase KdpD -
  BLD42_RS10075 - 639661..640302 (+) 642 WP_234744382.1 DUF4118 domain-containing protein -
  BLD42_RS03485 (BLD42_03485) uvrB 640404..642377 (-) 1974 WP_070316424.1 excinuclease ABC subunit UvrB -
  BLD42_RS03490 (BLD42_03490) - 642531..642761 (+) 231 WP_002852327.1 hypothetical protein -
  BLD42_RS03495 (BLD42_03495) - 642751..642993 (+) 243 WP_002854947.1 hypothetical protein -
  BLD42_RS03500 (BLD42_03500) Cj0683 642990..643427 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BLD42_RS03505 (BLD42_03505) priA 643409..645262 (+) 1854 WP_002908515.1 primosomal protein N' -
  BLD42_RS03510 (BLD42_03510) cipA 645272..646666 (-) 1395 WP_070316423.1 DUF2972 domain-containing protein -
  BLD42_RS03515 (BLD42_03515) ispG 646812..647885 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=203283 BLD42_RS03500 WP_002852324.1 642990..643427(+) (Cj0683) [Campylobacter jejuni strain TS1218]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=203283 BLD42_RS03500 WP_002852324.1 642990..643427(+) (Cj0683) [Campylobacter jejuni strain TS1218]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment