Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   BLD41_RS06410 Genome accession   NZ_CP017859
Coordinates   1159564..1160523 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YQ2210     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1140064..1172743 1159564..1160523 within 0


Gene organization within MGE regions


Location: 1140064..1172743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD41_RS06320 (BLD41_06320) pglI 1140064..1140993 (-) 930 WP_002854071.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  BLD41_RS06325 (BLD41_06325) pglH 1140986..1142065 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  BLD41_RS06330 (BLD41_06330) pglK 1142062..1143756 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  BLD41_RS06335 (BLD41_06335) galE 1143750..1144736 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  BLD41_RS06340 (BLD41_06340) - 1144794..1145588 (-) 795 WP_002875164.1 3'-5' exonuclease -
  BLD41_RS06345 (BLD41_06345) waaC 1145654..1146682 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  BLD41_RS06350 (BLD41_06350) htrB 1146672..1147559 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  BLD41_RS06355 (BLD41_06355) - 1147556..1149103 (+) 1548 WP_002875163.1 glycosyltransferase -
  BLD41_RS06360 (BLD41_06360) - 1149107..1150279 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  BLD41_RS06365 (BLD41_06365) - 1150263..1151258 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  BLD41_RS06370 (BLD41_06370) - 1151347..1152279 (+) 933 Protein_1201 glycosyltransferase -
  BLD41_RS06375 (BLD41_06375) wlaN 1152268..1153180 (-) 913 Protein_1202 beta-1,3 galactosyltransferase -
  BLD41_RS06380 (BLD41_06380) cstIII 1153235..1154119 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  BLD41_RS06385 (BLD41_06385) neuB1 1154100..1155131 (+) 1032 WP_002858213.1 sialic acid synthase -
  BLD41_RS06390 (BLD41_06390) neuC 1155128..1156243 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  BLD41_RS10375 - 1156240..1157154 (+) 915 Protein_1206 beta-1,4-N-acetylgalactosaminyltransferase -
  BLD41_RS10380 (BLD41_06395) - 1157188..1157850 (+) 663 WP_032596875.1 acylneuraminate cytidylyltransferase -
  BLD41_RS06400 (BLD41_06400) - 1157845..1158697 (-) 853 Protein_1208 glycosyltransferase -
  BLD41_RS06405 (BLD41_06405) waaV 1158681..1159505 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  BLD41_RS06410 (BLD41_06410) waaF 1159564..1160523 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  BLD41_RS06415 (BLD41_06415) gmhA 1160504..1161064 (-) 561 WP_002875424.1 D-sedoheptulose 7-phosphate isomerase -
  BLD41_RS06420 (BLD41_06420) rfaE1 1161061..1162446 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  BLD41_RS06425 (BLD41_06425) rfaD 1162439..1163392 (-) 954 WP_052794327.1 ADP-glyceromanno-heptose 6-epimerase -
  BLD41_RS06430 (BLD41_06430) gmhB 1163389..1163953 (-) 565 Protein_1214 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  BLD41_RS06435 (BLD41_06435) - 1164034..1164336 (+) 303 WP_002852762.1 cytochrome c -
  BLD41_RS06440 (BLD41_06440) ccoS 1164359..1164565 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  BLD41_RS06445 (BLD41_06445) - 1164562..1166919 (-) 2358 WP_079461021.1 heavy metal translocating P-type ATPase -
  BLD41_RS06450 (BLD41_06450) rho 1167028..1168326 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  BLD41_RS06455 (BLD41_06455) dnaX 1168330..1169859 (+) 1530 WP_052805599.1 DNA polymerase III subunit gamma/tau -
  BLD41_RS09680 - 1169856..1170185 (-) 330 WP_074471058.1 DUF2165 family protein -
  BLD41_RS09685 - 1170199..1170378 (-) 180 WP_074471059.1 DUF2165 family protein -
  BLD41_RS06465 (BLD41_06465) copA 1170450..1172549 (-) 2100 WP_052775081.1 copper-translocating P-type ATPase CopA -
  BLD41_RS06470 (BLD41_06470) - 1172549..1172743 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=203261 BLD41_RS06410 WP_002875425.1 1159564..1160523(+) (waaF) [Campylobacter jejuni strain YQ2210]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=203261 BLD41_RS06410 WP_002875425.1 1159564..1160523(+) (waaF) [Campylobacter jejuni strain YQ2210]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment