Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD40_RS08070 Genome accession   NZ_CP017856
Coordinates   1492343..1492654 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain ZP3204     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487343..1497654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD40_RS08050 (BLD40_08050) ctsE 1488212..1489771 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  BLD40_RS08055 (BLD40_08055) ctsX 1489761..1490348 (-) 588 WP_070317373.1 transformation system protein Machinery gene
  BLD40_RS08060 (BLD40_08060) ctsP 1490352..1490960 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD40_RS08065 (BLD40_08065) ctsD 1490953..1492365 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD40_RS08070 (BLD40_08070) ctsR 1492343..1492654 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  BLD40_RS08075 (BLD40_08075) nifJ 1492678..1496238 (-) 3561 WP_070317372.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD40_RS08080 (BLD40_08080) - 1496332..1496973 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=203247 BLD40_RS08070 WP_002855438.1 1492343..1492654(-) (ctsR) [Campylobacter jejuni strain ZP3204]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203247 BLD40_RS08070 WP_002855438.1 1492343..1492654(-) (ctsR) [Campylobacter jejuni strain ZP3204]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment