Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | BLD40_RS06465 | Genome accession | NZ_CP017856 |
| Coordinates | 1169352..1170311 (+) | Length | 319 a.a. |
| NCBI ID | WP_002875425.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain ZP3204 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1149847..1179647 | 1169352..1170311 | within | 0 |
Gene organization within MGE regions
Location: 1149847..1179647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLD40_RS06370 (BLD40_06370) | pglI | 1149847..1150776 (-) | 930 | WP_002854071.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| BLD40_RS06375 (BLD40_06375) | pglH | 1150769..1151848 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| BLD40_RS06380 (BLD40_06380) | pglK | 1151845..1153539 (-) | 1695 | WP_002890469.1 | ABC-type lipopolysaccharide transporter PglK | - |
| BLD40_RS06385 (BLD40_06385) | galE | 1153533..1154519 (-) | 987 | WP_002853529.1 | UDP-glucose 4-epimerase GalE | - |
| BLD40_RS06390 (BLD40_06390) | - | 1154577..1155371 (-) | 795 | WP_002875164.1 | 3'-5' exonuclease | - |
| BLD40_RS06395 (BLD40_06395) | waaC | 1155437..1156465 (+) | 1029 | WP_002858077.1 | lipopolysaccharide heptosyltransferase I | - |
| BLD40_RS06400 (BLD40_06400) | htrB | 1156455..1157342 (+) | 888 | WP_002858051.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| BLD40_RS06405 (BLD40_06405) | - | 1157339..1158886 (+) | 1548 | WP_002875163.1 | glycosyltransferase | - |
| BLD40_RS06410 (BLD40_06410) | - | 1158890..1160062 (+) | 1173 | WP_002858013.1 | glycosyltransferase family 2 protein | - |
| BLD40_RS06415 (BLD40_06415) | - | 1160046..1161041 (-) | 996 | WP_002858358.1 | capsular polysaccharide synthesis protein | - |
| BLD40_RS06420 (BLD40_06420) | - | 1161128..1162069 (+) | 942 | Protein_1203 | glycosyltransferase | - |
| BLD40_RS06425 (BLD40_06425) | wlaN | 1162058..1162970 (-) | 913 | Protein_1204 | beta-1,3 galactosyltransferase | - |
| BLD40_RS06430 (BLD40_06430) | cstIII | 1163025..1163909 (+) | 885 | WP_002858290.1 | alpha-2,3-sialyltransferase | - |
| BLD40_RS06435 (BLD40_06435) | neuB1 | 1163890..1164921 (+) | 1032 | WP_002858213.1 | sialic acid synthase | - |
| BLD40_RS06440 (BLD40_06440) | neuC | 1164918..1166033 (+) | 1116 | WP_002858400.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| BLD40_RS10455 | - | 1166030..1166896 (+) | 867 | Protein_1208 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| BLD40_RS10460 (BLD40_06445) | - | 1166978..1167640 (+) | 663 | WP_032596875.1 | acylneuraminate cytidylyltransferase | - |
| BLD40_RS09730 | - | 1167635..1168485 (-) | 851 | Protein_1210 | glycosyltransferase | - |
| BLD40_RS06460 (BLD40_06460) | waaV | 1168469..1169293 (-) | 825 | WP_002858096.1 | glycosyltransferase family 2 protein | - |
| BLD40_RS06465 (BLD40_06465) | waaF | 1169352..1170311 (+) | 960 | WP_002875425.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| BLD40_RS06470 (BLD40_06470) | gmhA | 1170292..1170852 (-) | 561 | WP_002875424.1 | D-sedoheptulose 7-phosphate isomerase | - |
| BLD40_RS06475 (BLD40_06475) | rfaE1 | 1170849..1172234 (-) | 1386 | WP_002858114.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| BLD40_RS06480 (BLD40_06480) | rfaD | 1172227..1173180 (-) | 954 | WP_052794327.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| BLD40_RS06485 (BLD40_06485) | gmhB | 1173177..1173741 (-) | 565 | Protein_1216 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| BLD40_RS06490 (BLD40_06490) | - | 1173822..1174124 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| BLD40_RS06495 (BLD40_06495) | ccoS | 1174147..1174353 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| BLD40_RS06500 (BLD40_06500) | - | 1174350..1176707 (-) | 2358 | WP_079461021.1 | heavy metal translocating P-type ATPase | - |
| BLD40_RS06505 (BLD40_06505) | rho | 1176816..1178114 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| BLD40_RS06510 (BLD40_06510) | dnaX | 1178118..1179647 (+) | 1530 | WP_052805599.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36734.30 Da Isoelectric Point: 10.2412
>NTDB_id=203234 BLD40_RS06465 WP_002875425.1 1169352..1170311(+) (waaF) [Campylobacter jejuni strain ZP3204]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=203234 BLD40_RS06465 WP_002875425.1 1169352..1170311(+) (waaF) [Campylobacter jejuni strain ZP3204]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
100 |
100 |
1 |