Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   BLD40_RS03740 Genome accession   NZ_CP017856
Coordinates   634691..635128 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain ZP3204     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629691..640128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD40_RS10210 - 630187..631338 (+) 1152 WP_234744381.1 sensor histidine kinase KdpD -
  BLD40_RS10215 - 631362..632003 (+) 642 WP_234744382.1 DUF4118 domain-containing protein -
  BLD40_RS03725 (BLD40_03725) uvrB 632105..634078 (-) 1974 WP_070317276.1 excinuclease ABC subunit UvrB -
  BLD40_RS03730 (BLD40_03730) - 634232..634462 (+) 231 WP_002852327.1 hypothetical protein -
  BLD40_RS03735 (BLD40_03735) - 634452..634694 (+) 243 WP_002854947.1 hypothetical protein -
  BLD40_RS03740 (BLD40_03740) Cj0683 634691..635128 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BLD40_RS03745 (BLD40_03745) priA 635110..636963 (+) 1854 WP_002908515.1 primosomal protein N' -
  BLD40_RS03750 (BLD40_03750) cipA 636973..638367 (-) 1395 WP_070316423.1 DUF2972 domain-containing protein -
  BLD40_RS03755 (BLD40_03755) ispG 638513..639586 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=203229 BLD40_RS03740 WP_002852324.1 634691..635128(+) (Cj0683) [Campylobacter jejuni strain ZP3204]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=203229 BLD40_RS03740 WP_002852324.1 634691..635128(+) (Cj0683) [Campylobacter jejuni strain ZP3204]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment