Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BLJ80_RS22800 Genome accession   NZ_CP017844
Coordinates   4174778..4175407 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FMU073332     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4169778..4180407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLJ80_RS22785 (BLJ80_20850) helD 4170020..4172074 (-) 2055 WP_001295354.1 DNA helicase IV -
  BLJ80_RS22790 (BLJ80_20855) yccF 4172197..4172643 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BLJ80_RS22795 (BLJ80_20860) yccS 4172653..4174815 (+) 2163 WP_072145235.1 YccS family putative transporter -
  BLJ80_RS22800 (BLJ80_20865) sxy/tfoX 4174778..4175407 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BLJ80_RS22805 (BLJ80_20870) sulA 4175626..4176135 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BLJ80_RS22815 (BLJ80_20880) ompA 4176492..4177532 (+) 1041 WP_000750416.1 porin OmpA -
  BLJ80_RS22820 (BLJ80_20885) matP 4177608..4178060 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BLJ80_RS22825 (BLJ80_20890) ycbZ 4178246..4180006 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=203199 BLJ80_RS22800 WP_000839153.1 4174778..4175407(-) (sxy/tfoX) [Escherichia coli strain FMU073332]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=203199 BLJ80_RS22800 WP_000839153.1 4174778..4175407(-) (sxy/tfoX) [Escherichia coli strain FMU073332]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment