Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   BG256_RS05230 Genome accession   NZ_CP017811
Coordinates   1057561..1057857 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NML-Hia-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1052561..1062857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG256_RS05205 (BG256_05205) - 1052989..1053546 (-) 558 WP_071162974.1 DNA-3-methyladenine glycosylase I -
  BG256_RS05210 (BG256_05210) aroE 1053543..1054361 (-) 819 WP_071162975.1 shikimate dehydrogenase -
  BG256_RS05215 (BG256_05215) - 1054365..1054916 (-) 552 WP_071162976.1 Sua5/YciO/YrdC/YwlC family protein -
  BG256_RS05220 (BG256_05220) - 1054932..1055468 (-) 537 WP_071162977.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  BG256_RS05225 (BG256_05225) - 1055478..1057394 (-) 1917 WP_071162978.1 ABC transporter ATP-binding protein -
  BG256_RS05230 (BG256_05230) HI0659 1057561..1057857 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  BG256_RS05235 (BG256_05235) - 1057850..1058032 (-) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  BG256_RS05240 (BG256_05240) - 1058293..1061252 (-) 2960 Protein_1005 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  BG256_RS09590 - 1061676..1061765 (+) 90 Protein_1006 ABC transporter -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=203137 BG256_RS05230 WP_005650837.1 1057561..1057857(-) (HI0659) [Haemophilus influenzae strain NML-Hia-1]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=203137 BG256_RS05230 WP_005650837.1 1057561..1057857(-) (HI0659) [Haemophilus influenzae strain NML-Hia-1]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTACGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment