Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BK817_RS09825 Genome accession   NZ_CP017802
Coordinates   2081574..2082197 (+) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella ornithinolytica strain MG isolate MG01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076574..2087197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK817_RS09805 (BK817_09520) - 2076676..2078433 (-) 1758 WP_071359275.1 AAA family ATPase -
  BK817_RS09810 (BK817_09525) matP 2078619..2079071 (+) 453 WP_048023133.1 macrodomain Ter protein MatP -
  BK817_RS09815 (BK817_09530) ompA 2079180..2080250 (-) 1071 WP_004860157.1 porin OmpA -
  BK817_RS09820 (BK817_09535) sulA 2080603..2081112 (-) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  BK817_RS09825 (BK817_09540) sxy/tfoX 2081574..2082197 (+) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  BK817_RS09830 (BK817_09545) yccS 2082185..2084320 (-) 2136 WP_004860163.1 YccS family putative transporter -
  BK817_RS09835 (BK817_09550) - 2084338..2084784 (-) 447 WP_004860167.1 YccF domain-containing protein -
  BK817_RS09840 (BK817_09555) helD 2084907..2086961 (+) 2055 WP_032717632.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=203073 BK817_RS09825 WP_004860161.1 2081574..2082197(+) (sxy/tfoX) [Raoultella ornithinolytica strain MG isolate MG01]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=203073 BK817_RS09825 WP_004860161.1 2081574..2082197(+) (sxy/tfoX) [Raoultella ornithinolytica strain MG isolate MG01]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
GTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATTAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGTGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502

Multiple sequence alignment