Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CJZ71_RS20550 Genome accession   NZ_CP022891
Coordinates   3869542..3869820 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   P39758
Organism   Bacillus subtilis strain DKU_NT_03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3864542..3874820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS20530 (CJZ71_20530) - 3865192..3866544 (-) 1353 WP_014478984.1 IS1182 family transposase -
  CJZ71_RS20535 (CJZ71_20535) ampS 3866674..3867906 (-) 1233 WP_003232341.1 aminopeptidase -
  CJZ71_RS20540 (CJZ71_20540) ykpC 3868016..3868150 (-) 135 WP_003238865.1 protein YkpC -
  CJZ71_RS20545 (CJZ71_20545) mreBH 3868251..3869258 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  CJZ71_RS20550 (CJZ71_20550) abrB 3869542..3869820 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  CJZ71_RS20555 (CJZ71_20555) - 3870208..3871332 (+) 1125 WP_014478926.1 IS4-like element IS4Bsu1 family transposase -
  CJZ71_RS20560 (CJZ71_20560) kinC 3871479..3872711 (+) 1233 WP_095010836.1 two-component sensor histidine kinase KinC -
  CJZ71_RS20565 (CJZ71_20565) ykqA 3872727..3873560 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  CJZ71_RS20570 (CJZ71_20570) ktrC 3873623..3874288 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=203048 CJZ71_RS20550 WP_003244728.1 3869542..3869820(+) (abrB) [Bacillus subtilis strain DKU_NT_03]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=203048 CJZ71_RS20550 WP_003244728.1 3869542..3869820(+) (abrB) [Bacillus subtilis strain DKU_NT_03]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2FY9
  PDB 2RO3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576