Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CJZ71_RS20420 Genome accession   NZ_CP022891
Coordinates   3842597..3843172 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain DKU_NT_03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837597..3848172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS20390 (CJZ71_20390) dapD 3837785..3838495 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CJZ71_RS20395 (CJZ71_20395) dapI 3838565..3839689 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  CJZ71_RS20400 (CJZ71_20400) ykuS 3839751..3839996 (+) 246 WP_003232382.1 YkuS family protein -
  CJZ71_RS20405 (CJZ71_20405) mscT 3840033..3840836 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  CJZ71_RS20410 (CJZ71_20410) ahpA 3841073..3841615 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  CJZ71_RS20415 (CJZ71_20415) ykuV 3841685..3842131 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  CJZ71_RS20420 (CJZ71_20420) rok 3842597..3843172 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  CJZ71_RS20430 (CJZ71_20430) cse15 3844503..3845468 (-) 966 WP_014479669.1 spore protein Cse15 -
  CJZ71_RS20435 (CJZ71_20435) mobA 3845605..3846204 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  CJZ71_RS20440 (CJZ71_20440) moeB 3846255..3847274 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=203047 CJZ71_RS20420 WP_003232378.1 3842597..3843172(+) (rok) [Bacillus subtilis strain DKU_NT_03]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=203047 CJZ71_RS20420 WP_003232378.1 3842597..3843172(+) (rok) [Bacillus subtilis strain DKU_NT_03]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1