Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CJZ71_RS16730 Genome accession   NZ_CP022891
Coordinates   3160853..3161569 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain DKU_NT_03     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155853..3166569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS16700 (CJZ71_16700) - 3156355..3156492 (+) 138 WP_072592513.1 hypothetical protein -
  CJZ71_RS16705 (CJZ71_16705) yflB 3156511..3156903 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  CJZ71_RS16710 (CJZ71_16710) - 3157028..3157279 (+) 252 Protein_3248 sodium:alanine symporter family protein -
  CJZ71_RS16715 (CJZ71_16715) - 3157228..3157557 (-) 330 Protein_3249 spore germination protein -
  CJZ71_RS16720 (CJZ71_16720) treP 3157664..3159076 (+) 1413 WP_069837362.1 PTS system trehalose-specific EIIBC component -
  CJZ71_RS16725 (CJZ71_16725) treC 3159147..3160832 (+) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  CJZ71_RS16730 (CJZ71_16730) treR 3160853..3161569 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  CJZ71_RS16735 (CJZ71_16735) hypO 3161709..3162374 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=203014 CJZ71_RS16730 WP_003233679.1 3160853..3161569(+) (treR) [Bacillus subtilis strain DKU_NT_03]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=203014 CJZ71_RS16730 WP_003233679.1 3160853..3161569(+) (treR) [Bacillus subtilis strain DKU_NT_03]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416