Detailed information NTG0203012

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CJZ71_RS16220
• Genome accession: NZ_CP022891
• Coordinates: 3057571..3058698 (-)
• Length: 375 a.a.
• NCBI ID: WP_052728183.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain DKU_NT_03
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3052571..3063698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJZ71_RS16205 (CJZ71_16205)	-	3054533..3055135 (+)	603	WP_046380830.1	hypothetical protein	-
CJZ71_RS16210 (CJZ71_16210)	-	3055135..3057006 (+)	1872	WP_046380831.1	hypothetical protein	-
CJZ71_RS23205	-	3057107..3057265 (-)	159	WP_121509446.1	YgjP-like metallopeptidase domain-containing protein	-
CJZ71_RS16215 (CJZ71_16215)	-	3057384..3057581 (-)	198	WP_003240078.1	hypothetical protein	-
CJZ71_RS16220 (CJZ71_16220)	rapC	3057571..3058698 (-)	1128	WP_052728183.1	tetratricopeptide repeat protein	Regulator
CJZ71_RS16225 (CJZ71_16225)	-	3058887..3059123 (-)	237	Protein_3150	hypothetical protein	-
CJZ71_RS16230 (CJZ71_16230)	-	3059273..3059665 (-)	393	WP_046380833.1	hypothetical protein	-
CJZ71_RS16235 (CJZ71_16235)	-	3059998..3060468 (-)	471	WP_046380834.1	antitoxin YezG family protein	-
CJZ71_RS16240 (CJZ71_16240)	yeeF	3060473..3062479 (-)	2007	WP_046380835.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	-
CJZ71_RS16245 (CJZ71_16245)	-	3062646..3062984 (+)	339	WP_069837346.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44492.19 Da
• Isoelectric Point: 6.6870

>NTDB_id=203012 CJZ71_RS16220 WP_052728183.1 3057571..3058698(-) (rapC) [Bacillus subtilis strain DKU_NT_03]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPTEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSIFQFKKSNFNNLTQAYHDLALIYFLQHKQEQAMDCFRKGVRFACKFDDDLFKIMFEGLQTLFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide

• Length: 1128 bp

>NTDB_id=203012 CJZ71_RS16220 WP_052728183.1 3057571..3058698(-) (rapC) [Bacillus subtilis strain DKU_NT_03]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCTACTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAACACAATTCCCTATATTTCAGATGAAATTG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACGCACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGATGACCTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGAGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATATTCCAATTTAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGAACAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGATGATG
ACCTATTTAAAATTATGTTTGAAGGATTGCAGACGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-286)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (187-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.421
rapF	Bacillus subtilis subsp. subtilis str. 168	38.786	100	0.392