Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CJZ71_RS12485 Genome accession   NZ_CP022891
Coordinates   2320189..2320419 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DKU_NT_03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315189..2325419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS12455 (CJZ71_12455) ridA 2315352..2315729 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  CJZ71_RS12460 (CJZ71_12460) spoVG 2315924..2316217 (+) 294 WP_003218346.1 septation regulator SpoVG -
  CJZ71_RS12465 (CJZ71_12465) glmU 2316410..2317780 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CJZ71_RS12470 (CJZ71_12470) prsS 2317803..2318756 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  CJZ71_RS12475 (CJZ71_12475) rplYB 2318842..2319456 (+) 615 WP_043940261.1 50S ribosomal protein L25/general stress protein Ctc -
  CJZ71_RS12480 (CJZ71_12480) pth 2319563..2320129 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  CJZ71_RS12485 (CJZ71_12485) subA/fin 2320189..2320419 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  CJZ71_RS12490 (CJZ71_12490) mfd 2320489..2324022 (+) 3534 WP_015253006.1 transcription-repair coupling factor -
  CJZ71_RS12495 (CJZ71_12495) spoVT 2324158..2324694 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=202993 CJZ71_RS12485 WP_003243417.1 2320189..2320419(+) (subA/fin) [Bacillus subtilis strain DKU_NT_03]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=202993 CJZ71_RS12485 WP_003243417.1 2320189..2320419(+) (subA/fin) [Bacillus subtilis strain DKU_NT_03]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1