Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CJZ71_RS09860 Genome accession   NZ_CP022891
Coordinates   1816667..1817800 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_03     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811667..1822800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS09820 (CJZ71_09820) ywnA 1811795..1812196 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  CJZ71_RS09825 (CJZ71_09825) ureC 1812331..1814040 (-) 1710 WP_003243090.1 urease subunit alpha -
  CJZ71_RS09830 (CJZ71_09830) ureB 1814037..1814411 (-) 375 WP_003227726.1 urease subunit beta -
  CJZ71_RS09835 (CJZ71_09835) ureA 1814408..1814725 (-) 318 WP_014478236.1 urease subunit gamma -
  CJZ71_RS22430 - 1814919..1815041 (-) 123 Protein_1942 hypothetical protein -
  CJZ71_RS09845 (CJZ71_09845) - 1815288..1815470 (-) 183 WP_069837820.1 transporter substrate-binding protein -
  CJZ71_RS09850 (CJZ71_09850) csbD 1815771..1815959 (-) 189 WP_014481173.1 stress response protein CsbD -
  CJZ71_RS09855 (CJZ71_09855) - 1816033..1816512 (-) 480 WP_003244390.1 hypothetical protein -
  CJZ71_RS09860 (CJZ71_09860) rapC 1816667..1817800 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  CJZ71_RS09870 (CJZ71_09870) moaA 1817992..1819017 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  CJZ71_RS09875 (CJZ71_09875) fdhD 1819033..1819821 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  CJZ71_RS09880 (CJZ71_09880) - 1820054..1820215 (-) 162 WP_003227706.1 hypothetical protein -
  CJZ71_RS09885 (CJZ71_09885) ywmD 1820310..1820984 (-) 675 WP_014481179.1 VWA domain-containing protein -
  CJZ71_RS22435 - 1821037..1821177 (-) 141 WP_014481180.1 hypothetical protein -
  CJZ71_RS09895 (CJZ71_09895) ywmC 1821308..1821991 (-) 684 WP_014481181.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=202976 CJZ71_RS09860 WP_015251020.1 1816667..1817800(-) (rapC) [Bacillus subtilis strain DKU_NT_03]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=202976 CJZ71_RS09860 WP_015251020.1 1816667..1817800(-) (rapC) [Bacillus subtilis strain DKU_NT_03]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCACTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424