Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BK049_RS17115 Genome accession   NZ_CP017786
Coordinates   3338996..3339607 (-) Length   203 a.a.
NCBI ID   WP_071169020.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3333996..3344607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS17095 (BK049_17095) - 3334335..3335039 (+) 705 WP_008356803.1 DnaD domain-containing protein -
  BK049_RS17100 (BK049_17100) nth 3335057..3335719 (+) 663 WP_008356805.1 endonuclease III -
  BK049_RS17105 (BK049_17105) - 3335716..3336225 (+) 510 WP_071169018.1 YpoC family protein -
  BK049_RS17110 (BK049_17110) - 3336262..3338952 (-) 2691 WP_071169019.1 PBP1A family penicillin-binding protein -
  BK049_RS17115 (BK049_17115) recU 3338996..3339607 (-) 612 WP_071169020.1 Holliday junction resolvase RecU Machinery gene
  BK049_RS17120 (BK049_17120) - 3339654..3340610 (+) 957 WP_071169021.1 DUF2515 domain-containing protein -
  BK049_RS17125 (BK049_17125) sspM 3340634..3340738 (-) 105 WP_008356814.1 acid-soluble spore protein SspM -
  BK049_RS17130 (BK049_17130) - 3340935..3341168 (+) 234 WP_232532035.1 DUF5446 family protein -
  BK049_RS17135 (BK049_17135) - 3341218..3341598 (+) 381 WP_232532036.1 YppE family protein -
  BK049_RS17140 (BK049_17140) - 3341706..3342155 (+) 450 WP_071169023.1 YppG family protein -
  BK049_RS17145 (BK049_17145) - 3342174..3342593 (-) 420 WP_008356823.1 Hsp20/alpha crystallin family protein -
  BK049_RS17150 (BK049_17150) - 3342762..3343268 (+) 507 WP_008356825.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23420.52 Da        Isoelectric Point: 9.4228

>NTDB_id=202944 BK049_RS17115 WP_071169020.1 3338996..3339607(-) (recU) [Bacillus xiamenensis strain VV3]
MIRYPNGKSYQPIQQIGTKKRVRGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
RNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=202944 BK049_RS17115 WP_071169020.1 3338996..3339607(-) (recU) [Bacillus xiamenensis strain VV3]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAGTCAGGGGCGAATCCTC
TTATAGTAATCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTCAATGTGGACTATCCGAAAAGAAGTGCCGCTGTCATTAAAGAAGCTTAT
TTTAAACAATCATCTACGACAGACTATAACGGGGTGTACAAAGGGCGGTATATCGACTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGCTCCGTTTATTATTTATCCGCTTCCGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CGAAATGGGCGCAAATCCATTAGTAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTCAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment