Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BK049_RS15640 Genome accession   NZ_CP017786
Coordinates   3071965..3072735 (+) Length   256 a.a.
NCBI ID   WP_008356268.1    Uniprot ID   A0AAC9IHY0
Organism   Bacillus xiamenensis strain VV3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3066965..3077735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS15610 (BK049_15610) - 3067292..3069382 (+) 2091 WP_174549253.1 HD family phosphohydrolase -
  BK049_RS15615 (BK049_15615) ybeY 3069383..3069862 (+) 480 WP_008356260.1 rRNA maturation RNase YbeY -
  BK049_RS15620 (BK049_15620) - 3069840..3070226 (+) 387 WP_071168913.1 diacylglycerol kinase family protein -
  BK049_RS15625 (BK049_15625) - 3070339..3070737 (+) 399 WP_008356263.1 cytidine deaminase -
  BK049_RS15630 (BK049_15630) era 3070730..3071635 (+) 906 WP_007501305.1 GTPase Era -
  BK049_RS15635 (BK049_15635) - 3071783..3071929 (+) 147 WP_008356266.1 YqzL family protein -
  BK049_RS15640 (BK049_15640) recO 3071965..3072735 (+) 771 WP_008356268.1 DNA repair protein RecO Machinery gene
  BK049_RS15645 (BK049_15645) glyQ 3073066..3073953 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  BK049_RS15650 (BK049_15650) glyS 3073946..3075991 (+) 2046 WP_071168914.1 glycine--tRNA ligase subunit beta -
  BK049_RS15655 (BK049_15655) - 3076157..3076795 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  BK049_RS15660 (BK049_15660) - 3076821..3077642 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29258.88 Da        Isoelectric Point: 7.7751

>NTDB_id=202938 BK049_RS15640 WP_008356268.1 3071965..3072735(+) (recO) [Bacillus xiamenensis strain VV3]
MLIKTEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKANSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELLDKGTDEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVIGLKPELDQCVHCGQKEG
QFHFSIRDNGFICEHCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMRKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=202938 BK049_RS15640 WP_008356268.1 3071965..3072735(+) (recO) [Bacillus xiamenensis strain VV3]
ATGCTCATTAAAACTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGGGCTAAAAAAGCTAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATCGAAAGCATGCGGGCC
ATCCGGGAGGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTCGATAAAGGAACAGATGAAAAGAAGCC
CAACCCTTACTTGTTTGAGCTCCTTCTTCAATCATTGCGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATAGGGCTGAAGCCTGAGCTTGATCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATTAGAGATAACGGATTCATCTGTGAGCATTGCTTTTCTAAAGATCCCTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTCCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATACGTCAAGTGCTCGATCACTACTATGACGAGTATTCAGGCCTTTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAGAAAGCTAATGGATGGCGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

74.609

100

0.746

Multiple sequence alignment