Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DN94_02570 Genome accession   CP007565
Coordinates   456464..457369 (+) Length   301 a.a.
NCBI ID   AHX74614.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 451464..462369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_02540 - 452356..453420 (+) 1065 AHX74608.1 MmcQ family protein -
  DN94_02545 - 453534..454526 (+) 993 AHX74609.1 asparagine synthetase AsnA -
  DN94_02550 - 454571..455020 (-) 450 AHX74610.1 bacteriocin transport accessory protein -
  DN94_02555 - 454986..455690 (+) 705 AHX74611.1 rRNA methyltransferase -
  DN94_02560 - 455702..455992 (+) 291 AHX74612.1 hypothetical protein -
  DN94_02565 - 455989..456474 (+) 486 AHX74613.1 phosphopantetheine adenylyltransferase -
  DN94_02570 sepM 456464..457369 (+) 906 AHX74614.1 peptidase S16 Regulator
  DN94_02580 - 458847..459425 (+) 579 AHX74615.1 transcriptional regulator -
  DN94_02585 - 459476..460582 (+) 1107 AHX74616.1 ribosomal RNA large subunit methyltransferase N -
  DN94_02590 - 460582..461097 (+) 516 AHX74617.1 teicoplanin resistance protein VanZ -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 32959.30 Da        Isoelectric Point: 10.3937

>NTDB_id=20292 DN94_02570 AHX74614.1 456464..457369(+) (sepM) [Streptococcus agalactiae strain 138spar]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVLYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKN
GIGIGLTDHTEVSSDVPVDFNTEGVGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAK
KGMDIFFVPNNPIDKNAKKGKTKVQTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 906 bp        

>NTDB_id=20292 DN94_02570 AHX74614.1 456464..457369(+) (sepM) [Streptococcus agalactiae strain 138spar]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTACTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGGCTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTTTCTGTCAGTCAAGCAACGCCA
GCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCTAGGTGATA
AAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCGGTTGGTAAAGTTATTAAACTATCAAACGGTAAAAAT
GGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTGATGTTCCTGTGGACTTTAATACTGAAGGTGTTGGAGG
ACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTAGTTAAAGAAGATTTACGTAAAGGACGTAAGATTG
CAGGCACTGGTACTATTGAGCAAAATGGGCATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAGCGGCTAAA
AAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAATGCTAAAAAAGGCAAAACAAAGGTTCAGACGAA
TTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCAGCAAGCTA
TTGATTATTTGAAAAAAACAAAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(186-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

56.932

100

0.641

Multiple sequence alignment