Detailed information NTG0202915

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BK049_RS08280
• Genome accession: NZ_CP017786
• Coordinates: 1640535..1641647 (-)
• Length: 370 a.a.
• NCBI ID: WP_071168273.1
• Uniprot ID: A0AAC9NCC4
• Organism: Bacillus xiamenensis strain VV3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1635535..1646647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BK049_RS08265 (BK049_08265)	gyrA	1635561..1638065 (-)	2505	WP_071168271.1	DNA gyrase subunit A	-
BK049_RS08270 (BK049_08270)	gyrB	1638298..1640214 (-)	1917	WP_071168272.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
BK049_RS08275 (BK049_08275)	-	1640272..1640517 (-)	246	WP_008360920.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
BK049_RS08280 (BK049_08280)	recF	1640535..1641647 (-)	1113	WP_071168273.1	DNA replication/repair protein RecF	Machinery gene
BK049_RS08285 (BK049_08285)	yaaA	1641664..1641879 (-)	216	WP_008360916.1	S4 domain-containing protein YaaA	-
BK049_RS08290 (BK049_08290)	dnaN	1642030..1643166 (-)	1137	WP_008360914.1	DNA polymerase III subunit beta	-
BK049_RS08295 (BK049_08295)	dnaA	1643363..1644703 (-)	1341	WP_008360911.1	chromosomal replication initiator protein DnaA	-
BK049_RS08300 (BK049_08300)	rpmH	1645324..1645458 (+)	135	WP_008360908.1	50S ribosomal protein L34	-
BK049_RS08305 (BK049_08305)	rnpA	1645537..1645896 (+)	360	WP_008360906.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42592.69 Da
• Isoelectric Point: 7.3664

>NTDB_id=202915 BK049_RS08280 WP_071168273.1 1640535..1641647(-) (recF) [Bacillus xiamenensis strain VV3]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFRKLRDREIDRGVTMWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide

• Length: 1113 bp

>NTDB_id=202915 BK049_RS08280 WP_071168273.1 1640535..1641647(-) (recF) [Bacillus xiamenensis strain VV3]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCAATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAACGGTCCA
CTCCCCATGCAGCTTGTGATCTCAAAAAAAGGAAAAAAGGGAAAAGTCAATCATATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCTTTAAACACCATCATGTTTGCACCAGAGGATCTCAGTCTTGTGAAAGGCAGCCCGCAAATCCGCAGAAGGT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTACATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAATTGATTGA
TGCAGCAGCGAAGGTTGTCAAAAGACGACTTACTTTTACGAAACAACTTGAAAAATGGGCGCAGCCGTTGCATTTTGGGA
TTTCTAGAGAACTAGAAACACTCACGCTCCAATACCAGACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCGAAAATTAAGAGACAGAGAAATAGACCGAGGGGTGACGATGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGTGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATCCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	83.469	99.73	0.832