Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BK049_RS07975 Genome accession   NZ_CP017786
Coordinates   1584527..1584817 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579527..1589817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS07960 (BK049_07960) - 1579712..1580995 (-) 1284 Protein_1545 ubiquitin-like domain-containing protein -
  BK049_RS07965 (BK049_07965) - 1581159..1581926 (-) 768 WP_071168251.1 TatD family hydrolase -
  BK049_RS07970 (BK049_07970) metG 1582008..1584008 (-) 2001 WP_008357460.1 methionine--tRNA ligase -
  BK049_RS07975 (BK049_07975) abrB 1584527..1584817 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BK049_RS07980 (BK049_07980) rsmI 1584862..1585743 (-) 882 WP_071168252.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BK049_RS07985 (BK049_07985) - 1585718..1586017 (-) 300 WP_008357464.1 GIY-YIG nuclease family protein -
  BK049_RS07990 (BK049_07990) - 1586004..1586747 (-) 744 WP_071168253.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BK049_RS07995 (BK049_07995) yabA 1586803..1587156 (-) 354 WP_008357468.1 DNA replication initiation control protein YabA -
  BK049_RS08000 (BK049_08000) - 1587171..1587998 (-) 828 WP_007496230.1 stage 0 sporulation family protein -
  BK049_RS08005 (BK049_08005) holB 1588001..1588990 (-) 990 WP_008357472.1 DNA polymerase III subunit delta' -
  BK049_RS08010 (BK049_08010) - 1589002..1589442 (-) 441 WP_008357474.1 YaaR family protein -
  BK049_RS08015 (BK049_08015) - 1589455..1589784 (-) 330 WP_071169204.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=202913 BK049_RS07975 WP_087975202.1 1584527..1584817(+) (abrB) [Bacillus xiamenensis strain VV3]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=202913 BK049_RS07975 WP_087975202.1 1584527..1584817(+) (abrB) [Bacillus xiamenensis strain VV3]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GTTAGGAATTGCTGAAAAAGACGCTTTGGAAATCTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAGCCAAATA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAATCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment