Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BK049_RS06335 Genome accession   NZ_CP017786
Coordinates   1276528..1276956 (+) Length   142 a.a.
NCBI ID   WP_071168113.1    Uniprot ID   A0AAC9IEY7
Organism   Bacillus xiamenensis strain VV3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1271528..1281956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS06325 (BK049_06325) - 1272116..1274101 (-) 1986 WP_071168111.1 hydantoinase B/oxoprolinase family protein -
  BK049_RS06330 (BK049_06330) - 1274091..1276160 (-) 2070 WP_071168112.1 hydantoinase/oxoprolinase family protein -
  BK049_RS06335 (BK049_06335) nucA/comI 1276528..1276956 (+) 429 WP_071168113.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BK049_RS06340 (BK049_06340) - 1277083..1278780 (+) 1698 WP_071168114.1 methyl-accepting chemotaxis protein -
  BK049_RS06345 (BK049_06345) comJ 1278919..1279308 (+) 390 WP_008359494.1 competence protein ComJ -
  BK049_RS06350 (BK049_06350) - 1279310..1280116 (-) 807 WP_008359492.1 AAC(3) family N-acetyltransferase -
  BK049_RS06355 (BK049_06355) - 1280144..1280608 (-) 465 WP_083381094.1 Lrp/AsnC family transcriptional regulator -
  BK049_RS06360 (BK049_06360) - 1280677..1281438 (+) 762 WP_071168115.1 MBL fold metallo-hydrolase -
  BK049_RS06365 (BK049_06365) - 1281490..1281822 (-) 333 WP_071168116.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15975.80 Da        Isoelectric Point: 4.9997

>NTDB_id=202910 BK049_RS06335 WP_071168113.1 1276528..1276956(+) (nucA/comI) [Bacillus xiamenensis strain VV3]
MKLLKTILLLLLIVIGVATGYIQLEQSKQETTDSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRENSDEQRDRS
LHGIPTKHGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=202910 BK049_RS06335 WP_071168113.1 1276528..1276956(+) (nucA/comI) [Bacillus xiamenensis strain VV3]
ATGAAACTTCTTAAAACCATTCTCCTGCTTTTATTGATAGTCATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAAG
TAAACAAGAGACAACAGACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACAGCCAAGCACA
TAGAAGAGGCAATTGATGAAGGTCATTCTTCCATTTGTACGATTGATCGAGAAAATAGTGATGAGCAGAGAGACCGATCA
CTGCATGGCATCCCAACAAAGCATGGATATGATCGAGACGAATGGCCAATGGCAATGTGTAAAGAAGGAGGAACAGGCGC
TTCTGTGAAATATGTGCGTCCATCAGATAACAGAGGCGCAGGCTCTTGGGTAAGTCATCAATTATCCGATGATCCTGATG
GAACAAGAATCCAATTTATTATTGACTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.983

85.211

0.528

Multiple sequence alignment