Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BK049_RS03045 Genome accession   NZ_CP017786
Coordinates   609947..610525 (-) Length   192 a.a.
NCBI ID   WP_071167817.1    Uniprot ID   A0AAC9NBB0
Organism   Bacillus xiamenensis strain VV3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 604947..615525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS03025 (BK049_03025) - 605255..606694 (+) 1440 WP_071167813.1 PLP-dependent aminotransferase family protein -
  BK049_RS03030 (BK049_03030) - 606726..607208 (-) 483 WP_071167814.1 hypothetical protein -
  BK049_RS18695 - 607502..607777 (-) 276 Protein_616 cupin domain-containing protein -
  BK049_RS03035 (BK049_03035) - 607850..608959 (-) 1110 WP_071167815.1 threonine synthase -
  BK049_RS03040 (BK049_03040) - 608984..609655 (-) 672 WP_071167816.1 helix-turn-helix transcriptional regulator -
  BK049_RS19260 - 609677..609799 (-) 123 Protein_619 D-TA family PLP-dependent enzyme -
  BK049_RS03045 (BK049_03045) comK 609947..610525 (-) 579 WP_071167817.1 competence protein ComK Regulator
  BK049_RS03050 (BK049_03050) - 610815..611051 (+) 237 WP_008348804.1 IDEAL domain-containing protein -
  BK049_RS03055 (BK049_03055) - 611108..611968 (-) 861 WP_071167818.1 SDR family oxidoreductase -
  BK049_RS03060 (BK049_03060) - 612110..613642 (+) 1533 WP_071167819.1 FAD-dependent oxidoreductase -
  BK049_RS03065 (BK049_03065) - 613735..615030 (+) 1296 WP_008359045.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22359.38 Da        Isoelectric Point: 8.8014

>NTDB_id=202904 BK049_RS03045 WP_071167817.1 609947..610525(-) (comK) [Bacillus xiamenensis strain VV3]
MSGISETPLDSYVINQTTMAVLPIEEGKRVYSKVIERETSFYVELKPLHIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=202904 BK049_RS03045 WP_071167817.1 609947..610525(-) (comK) [Bacillus xiamenensis strain VV3]
GTGTCAGGAATTAGCGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGATTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATTGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCTCTGCACATTATAGAACGCA
GCTGTAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATTTGTATTTCTTCCCAACCTATTCATCCAACCGCCCCCAGTGCGGATGGATTTCCCA
CAAATACATTCATACCTTTCAAGAATCGTCCCTCGGAGACACGGTTGTCACTTTTACCAATGAGCAATCGGTCAAACTGG
ACGTCTCATATAAATCATTTGAAAGTCAGGTGCACCGCACAGCATATCTTCGAACGAAATTTCAAGACCGTCTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGACTTTATTTTAAGAGA
ACTTCGTAATCGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment