Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   BK049_RS02940 Genome accession   NZ_CP017786
Coordinates   589025..592534 (-) Length   1169 a.a.
NCBI ID   WP_071167810.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584025..597534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS02930 (BK049_02930) sbcD 584141..585316 (-) 1176 WP_008355143.1 exonuclease subunit SbcD -
  BK049_RS02935 (BK049_02935) addA 585343..589047 (-) 3705 WP_071167809.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BK049_RS02940 (BK049_02940) addB 589025..592534 (-) 3510 WP_071167810.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  BK049_RS02945 (BK049_02945) - 592702..593148 (+) 447 WP_008355136.1 ferritin-like domain-containing protein -
  BK049_RS02950 (BK049_02950) - 593344..593754 (-) 411 WP_008355134.1 DoxX family protein -
  BK049_RS02955 (BK049_02955) - 593812..594651 (-) 840 WP_008355132.1 M56 family metallopeptidase -
  BK049_RS02960 (BK049_02960) - 594644..595066 (-) 423 WP_008355129.1 BlaI/MecI/CopY family transcriptional regulator -
  BK049_RS02965 (BK049_02965) - 595338..596483 (+) 1146 WP_008355127.1 AbrB family transcriptional regulator -
  BK049_RS02970 (BK049_02970) lepB 596521..597033 (-) 513 WP_008355125.1 signal peptidase I -

Sequence

Protein


Download         Length: 1169 a.a.        Molecular weight: 134897.01 Da        Isoelectric Point: 5.3128

>NTDB_id=202902 BK049_RS02940 WP_071167810.1 589025..592534(-) (addB) [Bacillus xiamenensis strain VV3]
MEIQFLAGRSGSGKTTAILEEIKEQLRLDPLGPPIIFLVPDQMTFLMEYELAKTSDAGGMIRAKVFSFTRLAWSVLQQTG
GANRQFVTSTGIQMLLRKVIEEQKDKFKVFKKASDKPGFVEQIEKTMAEFKRYCMMPEDIEKISVSSLHSEYTEERRAAE
KLHDLHVLYQQMEQYLQDEYVHSEDYLTLLAQQIPLSEELKGAHIYIDGFYQFTPQQLLVIEQLLLHAAKITAAFTVDRP
YHETQPNELDLFRMTGKTYFQLYQLAKECGSSISEHMLERNKRHLHAPDLAYLENQYEQRPLQPYQEETPHLTVSKSANK
RAEMEGVARDILDLVREEGLRLRDISIVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIRSSLDVIKGNWRY
EAVFRCVKTEFLFPLELAKNKAREQADQLENYCIAYGVKGERWTNGSRFHYRRFQSLDEDFGQTDQEIEMEQMLNDVKDW
IVPPLFQLQKRLTKAQKVRDMVEALYVFLEEIQVPDKLEKARLEAEEAGRQAEAMQHGQVWDAVIQLMDEFVEMLGEEEL
SFPLFQQMMDTGLASLKFALIPPSLDQVFVGSMDLSRMYQVKCTFIIGVNDGVIPARPSDESVLSEDDREWLKRAGAELA
ETGKERLLDEQFLIYQALSSPSRHLYLSYSASDTEGRSLLPSTLIKYCQELMPHHQHALYVLDPEQLDDQEQLKFVANEH
VSLSYTVSQLQQWLNQYPISGVWWSVYNDLMTSPNRDVSKKIMSSLFFTNRAKRLKPNVTKELYGDHIQGSVSRMEKFNA
CAFSHFASHGLKLKDRQFYKLEAPDIGQLFHSALKHISDTLVEQKKEWKNLTKEDCVSYSRHAIEQLAPRLQKEILLSSN
RHAYMKEKLQKILIRVSSILSEHAKVSGFSPVGLELGFGGQGPLPPFTFQLKNGCTMELVGRIDRVDKAEGSKGLLLRIV
DYKSSEKGLDLAEVYYGLALQMLTYLDLTITYSKEWLGMEATPAGILYFHIHDPLIQAPIPLAEDEIEQEIFKKFKMKGL
LLEDVEAVKLMDQTLESGRSQVIQAGLKKDGSFRSDSAVLSEEHFHILTKHVRRTFEEAGEKITNGEVEINPYKLKDQTP
CRFCSFKSICQFDESIEDNEFRVLTSEKDDVMIDRIKKEGDQYANTKTE

Nucleotide


Download         Length: 3510 bp        

>NTDB_id=202902 BK049_RS02940 WP_071167810.1 589025..592534(-) (addB) [Bacillus xiamenensis strain VV3]
GTGGAGATTCAGTTTTTAGCAGGCAGATCGGGGAGTGGAAAAACGACTGCAATCTTAGAAGAGATCAAAGAACAACTTAG
GCTTGATCCGCTGGGTCCGCCCATCATTTTTTTAGTCCCGGATCAAATGACATTTTTAATGGAATATGAGCTTGCAAAAA
CGTCTGACGCTGGCGGTATGATCAGAGCCAAAGTCTTTAGTTTTACTCGTCTTGCTTGGTCTGTTTTACAGCAGACTGGC
GGAGCGAACCGGCAATTTGTCACTAGCACGGGAATTCAGATGCTCTTAAGAAAAGTGATTGAAGAGCAGAAAGACAAGTT
TAAAGTATTCAAAAAAGCGAGTGATAAGCCGGGATTTGTTGAGCAAATAGAAAAGACGATGGCTGAATTTAAAAGGTACT
GCATGATGCCGGAGGATATTGAAAAAATATCAGTATCCAGCTTGCATTCAGAGTATACAGAAGAAAGACGGGCTGCCGAA
AAGCTGCATGATCTGCATGTTCTTTATCAGCAGATGGAGCAGTATTTACAAGATGAATATGTGCATTCAGAGGACTACTT
GACACTTCTGGCACAGCAAATTCCATTATCTGAGGAATTAAAAGGAGCACACATTTATATAGATGGTTTTTACCAGTTTA
CCCCGCAGCAGCTCCTAGTCATTGAACAGCTTCTGCTCCATGCAGCAAAAATAACGGCTGCTTTCACAGTGGATCGTCCA
TATCATGAGACACAGCCAAATGAACTTGATTTATTTCGGATGACCGGTAAAACATATTTTCAGCTTTATCAGCTTGCCAA
AGAGTGTGGATCGTCCATTTCTGAACACATGTTGGAGAGAAATAAGCGGCATCTTCATGCACCAGATCTTGCTTATTTAG
AAAACCAGTATGAACAAAGACCGCTTCAGCCTTATCAAGAAGAAACGCCTCATCTCACCGTGTCAAAAAGCGCAAACAAA
CGAGCTGAAATGGAGGGAGTAGCGAGAGATATTCTTGATTTAGTGAGAGAGGAAGGGCTTAGGCTGCGTGACATCTCAAT
TGTGGCAAGGCATGTTGACGACTATAAAGATACGTTAAAAGAGGTGTTTCGAGATTACGATATTCCTTTTTTTATTGATG
GAAATGAATCAATGCAGTATCATCCGCTCATTGAATTGATTCGTTCAAGCCTCGATGTCATAAAAGGGAACTGGCGGTAT
GAAGCGGTGTTTCGCTGTGTGAAAACAGAGTTCCTATTTCCGCTCGAACTCGCCAAAAACAAAGCAAGAGAACAGGCAGA
TCAGCTAGAAAACTATTGTATTGCTTATGGTGTAAAGGGCGAACGCTGGACAAACGGCTCTCGTTTTCATTACAGGCGAT
TTCAATCATTAGATGAAGATTTTGGACAAACAGATCAAGAAATTGAAATGGAACAAATGCTAAATGACGTAAAAGACTGG
ATTGTTCCTCCTCTTTTTCAGTTGCAAAAAAGATTGACAAAAGCGCAAAAGGTGAGAGACATGGTGGAGGCTCTCTATGT
CTTTTTAGAAGAAATACAAGTACCGGATAAGCTTGAAAAGGCAAGACTTGAGGCTGAAGAAGCAGGCAGGCAGGCTGAAG
CGATGCAGCACGGGCAAGTATGGGATGCTGTGATTCAATTAATGGATGAATTTGTTGAAATGCTCGGCGAGGAGGAGCTT
TCCTTTCCATTATTCCAACAGATGATGGATACAGGATTGGCATCTCTAAAGTTCGCTTTGATTCCACCTTCACTTGATCA
AGTATTTGTAGGAAGTATGGATTTATCCAGAATGTATCAAGTGAAGTGCACATTTATCATTGGCGTAAATGATGGCGTTA
TCCCTGCGCGGCCTTCTGATGAAAGTGTATTGTCTGAGGATGACCGGGAATGGTTAAAGCGTGCAGGAGCAGAGCTGGCA
GAGACAGGAAAGGAACGGCTGCTGGATGAGCAGTTTTTAATTTACCAGGCGTTATCCAGCCCATCCCGCCATCTCTATTT
ATCCTATTCAGCTTCAGATACGGAAGGGCGATCTCTTTTGCCTTCGACGCTCATCAAGTATTGCCAAGAACTGATGCCAC
ATCACCAGCATGCGCTTTATGTGTTAGATCCAGAGCAACTGGATGATCAGGAACAATTAAAATTTGTAGCAAACGAGCAT
GTCTCGTTATCCTATACCGTCTCACAGCTGCAGCAATGGCTTAATCAATATCCCATCAGCGGTGTATGGTGGAGTGTATA
TAATGATTTAATGACGTCGCCTAATCGTGATGTATCAAAAAAGATCATGTCAAGTTTGTTTTTCACAAATAGAGCGAAGC
GATTAAAACCAAACGTCACAAAAGAGCTTTATGGTGATCATATTCAAGGCAGTGTTTCGAGAATGGAGAAATTCAATGCG
TGTGCATTTTCTCATTTTGCTTCACACGGGTTAAAACTAAAAGATCGCCAATTTTACAAATTGGAAGCACCCGATATCGG
TCAGCTGTTTCACTCGGCGTTAAAGCATATTTCAGATACACTTGTTGAACAAAAAAAGGAATGGAAAAACTTAACGAAGG
AAGATTGTGTGTCCTACTCAAGACATGCAATTGAACAGCTGGCTCCGCGTTTGCAAAAGGAAATTCTATTAAGCTCGAAC
CGGCATGCTTATATGAAAGAAAAACTTCAAAAAATCCTCATAAGAGTTTCTTCTATATTAAGCGAACATGCCAAAGTGAG
CGGATTCTCTCCGGTTGGACTTGAATTAGGATTTGGAGGTCAAGGCCCTCTGCCGCCATTTACTTTTCAATTAAAAAATG
GCTGCACGATGGAGCTGGTCGGAAGGATTGACCGAGTGGATAAAGCAGAAGGTTCAAAAGGACTGCTTTTAAGAATTGTC
GACTATAAGTCTAGCGAAAAGGGGCTGGATCTAGCAGAAGTATACTATGGTTTGGCGCTGCAGATGCTCACTTACTTAGA
CCTGACCATTACGTATTCTAAAGAGTGGCTAGGCATGGAGGCGACACCGGCAGGAATTTTATACTTCCATATTCATGATC
CTCTCATTCAAGCGCCTATTCCGCTGGCAGAGGATGAAATTGAACAGGAAATCTTCAAGAAATTTAAAATGAAGGGTCTA
TTGCTCGAAGACGTAGAAGCTGTGAAGCTGATGGATCAAACGCTTGAATCAGGAAGGTCGCAAGTCATCCAAGCCGGTTT
GAAAAAGGATGGGTCTTTCCGGTCTGACTCTGCGGTATTAAGTGAAGAGCATTTTCACATTCTCACAAAACACGTTCGGC
GTACTTTTGAAGAGGCAGGGGAGAAAATTACAAATGGTGAGGTAGAGATCAATCCATATAAATTGAAGGATCAAACACCT
TGCCGCTTTTGCTCCTTTAAGTCTATTTGTCAGTTTGATGAATCAATAGAGGATAATGAATTTAGGGTGCTTACATCTGA
AAAGGATGATGTCATGATAGACCGGATCAAAAAAGAAGGGGATCAGTATGCAAATACCAAAACCGAATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

66.925

99.316

0.665

Multiple sequence alignment