Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   CJZ70_RS19920 Genome accession   NZ_CP022890
Coordinates   3805029..3805259 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DKU_NT_02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3800029..3810259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS19910 (CJZ70_19910) spoVT 3800754..3801290 (-) 537 WP_003218365.1 stage V sporulation protein T -
  CJZ70_RS19915 (CJZ70_19915) mfd 3801426..3804959 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  CJZ70_RS19920 (CJZ70_19920) subA/fin 3805029..3805259 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  CJZ70_RS19925 (CJZ70_19925) pth 3805319..3805885 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  CJZ70_RS19930 (CJZ70_19930) rplYB 3805992..3806606 (-) 615 WP_043940261.1 50S ribosomal protein L25/general stress protein Ctc -
  CJZ70_RS19935 (CJZ70_19935) prsS 3806692..3807645 (-) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  CJZ70_RS19940 (CJZ70_19940) glmU 3807668..3809038 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CJZ70_RS19945 (CJZ70_19945) spoVG 3809231..3809524 (-) 294 WP_003218346.1 septation regulator SpoVG -
  CJZ70_RS19950 (CJZ70_19950) ridA 3809719..3810096 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=202902 CJZ70_RS19920 WP_003243417.1 3805029..3805259(-) (subA/fin) [Bacillus subtilis strain DKU_NT_02]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=202902 CJZ70_RS19920 WP_003243417.1 3805029..3805259(-) (subA/fin) [Bacillus subtilis strain DKU_NT_02]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment