Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BK049_RS01580 Genome accession   NZ_CP017786
Coordinates   321193..321654 (+) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 316193..326654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS01560 (BK049_01560) - 317211..317426 (+) 216 WP_008356886.1 hypothetical protein -
  BK049_RS19430 - 317957..318115 (+) 159 WP_157292634.1 hypothetical protein -
  BK049_RS01565 (BK049_01565) - 318463..319596 (-) 1134 WP_071167692.1 Rap family tetratricopeptide repeat protein -
  BK049_RS01570 (BK049_01570) - 320031..320243 (+) 213 WP_244887362.1 hypothetical protein -
  BK049_RS19655 - 320398..320642 (+) 245 Protein_319 HAD hydrolase family protein -
  BK049_RS01580 (BK049_01580) kre 321193..321654 (+) 462 WP_008356877.1 YkyB family protein Regulator
  BK049_RS01585 (BK049_01585) - 321690..322598 (-) 909 WP_008356874.1 chemotaxis protein -
  BK049_RS01590 (BK049_01590) - 322672..323982 (-) 1311 WP_071167694.1 MFS transporter -
  BK049_RS01595 (BK049_01595) - 324109..324648 (-) 540 WP_008356870.1 RDD family protein -
  BK049_RS19435 - 324950..325102 (+) 153 WP_008356868.1 hypothetical protein -
  BK049_RS01600 (BK049_01600) - 325167..326051 (-) 885 WP_071167695.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=202892 BK049_RS01580 WP_008356877.1 321193..321654(+) (kre) [Bacillus xiamenensis strain VV3]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=202892 BK049_RS01580 WP_008356877.1 321193..321654(+) (kre) [Bacillus xiamenensis strain VV3]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTAAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAATAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGCAATTTAAATCAATCATATCGCAA
CCCAAAAGCGAATATGTCATTAAATCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCCGCCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTAGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment