Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   CJZ70_RS17815 Genome accession   NZ_CP022890
Coordinates   3370336..3370770 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain DKU_NT_02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3365336..3375770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS17800 (CJZ70_17800) poxB 3365735..3367459 (-) 1725 WP_046160070.1 pyruvate oxidase -
  CJZ70_RS17805 (CJZ70_17805) mutT 3367526..3367975 (-) 450 WP_046160069.1 8-oxo-dGTP diphosphatase MutT -
  CJZ70_RS17810 (CJZ70_17810) topB 3368088..3370271 (-) 2184 WP_046160064.1 DNA topoisomerase III -
  CJZ70_RS17815 (CJZ70_17815) lrpC 3370336..3370770 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  CJZ70_RS17820 (CJZ70_17820) ydzA 3370954..3371244 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  CJZ70_RS17825 (CJZ70_17825) amj 3371289..3372098 (-) 810 WP_014478868.1 lipid II flippase Amj -
  CJZ70_RS17830 (CJZ70_17830) ydaG 3372604..3373026 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  CJZ70_RS17835 (CJZ70_17835) ydaF 3373104..3373655 (-) 552 WP_014478866.1 GNAT family protein -
  CJZ70_RS17840 (CJZ70_17840) lyxE 3373743..3374246 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  CJZ70_RS17845 (CJZ70_17845) ydaD 3374262..3375122 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=202885 CJZ70_RS17815 WP_003246585.1 3370336..3370770(-) (lrpC) [Bacillus subtilis strain DKU_NT_02]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=202885 CJZ70_RS17815 WP_003246585.1 3370336..3370770(-) (lrpC) [Bacillus subtilis strain DKU_NT_02]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1