Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CJZ70_RS17255 Genome accession   NZ_CP022890
Coordinates   3280744..3281385 (-) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain DKU_NT_02     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3275744..3286385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS17240 (CJZ70_17240) ydfK 3276249..3276938 (+) 690 WP_003242513.1 DUF554 domain-containing protein -
  CJZ70_RS17245 (CJZ70_17245) cesA 3277140..3278042 (+) 903 WP_003242638.1 carboxylesterase -
  CJZ70_RS17250 (CJZ70_17250) pleJ 3278454..3280628 (-) 2175 WP_003243548.1 MMPL family transporter -
  CJZ70_RS17255 (CJZ70_17255) vraR 3280744..3281385 (-) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  CJZ70_RS17260 (CJZ70_17260) ydfH 3281378..3282601 (-) 1224 WP_010886422.1 two-component system sensor histidine kinase YdfH -
  CJZ70_RS17265 (CJZ70_17265) - 3282869..3283012 (+) 144 WP_003243880.1 hypothetical protein -
  CJZ70_RS17270 (CJZ70_17270) - 3283009..3283188 (+) 180 WP_010886421.1 hypothetical protein -
  CJZ70_RS17275 (CJZ70_17275) ydfG 3283274..3283717 (+) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  CJZ70_RS17280 (CJZ70_17280) ydfF 3283797..3284477 (-) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  CJZ70_RS17285 (CJZ70_17285) ydfE 3284567..3285190 (+) 624 WP_003243530.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=202884 CJZ70_RS17255 WP_003244318.1 3280744..3281385(-) (vraR) [Bacillus subtilis strain DKU_NT_02]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=202884 CJZ70_RS17255 WP_003244318.1 3280744..3281385(-) (vraR) [Bacillus subtilis strain DKU_NT_02]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTAGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362