Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BK055_RS16075 Genome accession   NZ_CP017775
Coordinates   3248337..3248981 (-) Length   214 a.a.
NCBI ID   WP_071181952.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3243337..3253981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS16040 (BK055_16040) - 3244522..3244953 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  BK055_RS16045 (BK055_16045) - 3244953..3245294 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  BK055_RS16050 (BK055_16050) - 3245287..3246768 (+) 1482 WP_071181951.1 Na+/H+ antiporter subunit D -
  BK055_RS16055 (BK055_16055) - 3246774..3247250 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  BK055_RS16060 (BK055_16060) - 3247250..3247534 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BK055_RS16065 (BK055_16065) mnhG 3247518..3247892 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BK055_RS16070 (BK055_16070) - 3247932..3248315 (-) 384 WP_065180456.1 hotdog fold thioesterase -
  BK055_RS16075 (BK055_16075) comA 3248337..3248981 (-) 645 WP_071181952.1 response regulator transcription factor Regulator
  BK055_RS16080 (BK055_16080) comP 3249062..3251368 (-) 2307 WP_071181953.1 sensor histidine kinase Regulator
  BK055_RS16085 (BK055_16085) comX 3251387..3251563 (-) 177 WP_017419424.1 competence pheromone ComX -
  BK055_RS16090 (BK055_16090) - 3251578..3252453 (-) 876 WP_026092320.1 polyprenyl synthetase family protein -
  BK055_RS16095 (BK055_16095) degQ 3252605..3252745 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BK055_RS16100 (BK055_16100) - 3253210..3253551 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24312.74 Da        Isoelectric Point: 4.9953

>NTDB_id=202834 BK055_RS16075 WP_071181952.1 3248337..3248981(-) (comA) [Bacillus velezensis strain 9912D]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSPPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=202834 BK055_RS16075 WP_071181952.1 3248337..3248981(-) (comA) [Bacillus velezensis strain 9912D]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTCCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment