Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BK055_RS14190 Genome accession   NZ_CP017775
Coordinates   2882476..2883228 (-) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2877476..2888228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS14160 (BK055_14160) - 2877822..2878256 (+) 435 WP_046559964.1 helix-turn-helix domain-containing protein -
  BK055_RS14165 (BK055_14165) - 2878270..2878716 (+) 447 WP_015968241.1 ImmA/IrrE family metallo-endopeptidase -
  BK055_RS14170 (BK055_14170) - 2878762..2880186 (+) 1425 WP_015968240.1 recombinase family protein -
  BK055_RS14175 (BK055_14175) radC 2880199..2880606 (-) 408 Protein_2810 RadC family protein -
  BK055_RS14180 (BK055_14180) - 2880638..2881207 (-) 570 WP_071181909.1 Maf family protein -
  BK055_RS14185 (BK055_14185) - 2881348..2882349 (-) 1002 WP_071181910.1 SPOR domain-containing protein -
  BK055_RS14190 (BK055_14190) comC 2882476..2883228 (-) 753 WP_071181911.1 prepilin peptidase Machinery gene
  BK055_RS14195 (BK055_14195) - 2883369..2884661 (-) 1293 WP_025649688.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BK055_RS14200 (BK055_14200) - 2884720..2887362 (-) 2643 WP_017418286.1 valine--tRNA ligase -
  BK055_RS14205 (BK055_14205) - 2887815..2888006 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=202829 BK055_RS14190 WP_071181911.1 2882476..2883228(-) (comC) [Bacillus velezensis strain 9912D]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=202829 BK055_RS14190 WP_071181911.1 2882476..2883228(-) (comC) [Bacillus velezensis strain 9912D]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment