Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BK055_RS04545 Genome accession   NZ_CP017775
Coordinates   892212..893003 (+) Length   263 a.a.
NCBI ID   WP_022552784.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 887212..898003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS04520 (BK055_04520) - 889206..890090 (+) 885 WP_071181647.1 PhzF family phenazine biosynthesis isomerase -
  BK055_RS04525 (BK055_04525) - 890167..890751 (+) 585 WP_017419145.1 nitroreductase family protein -
  BK055_RS04530 (BK055_04530) - 890791..890982 (-) 192 WP_003155508.1 YfhD family protein -
  BK055_RS04535 (BK055_04535) - 891053..891163 (-) 111 WP_003155504.1 YfhE family protein -
  BK055_RS04540 (BK055_04540) - 891221..892120 (-) 900 WP_063636898.1 TIGR01777 family oxidoreductase -
  BK055_RS04545 (BK055_04545) recX 892212..893003 (+) 792 WP_022552784.1 recombination regulator RecX Regulator
  BK055_RS04550 (BK055_04550) - 893010..893324 (+) 315 WP_007408553.1 YfhH family protein -
  BK055_RS04555 (BK055_04555) - 893469..894662 (+) 1194 WP_029973982.1 MFS transporter -
  BK055_RS04560 (BK055_04560) - 894702..895091 (-) 390 WP_071181648.1 DUF2606 family protein -
  BK055_RS04565 (BK055_04565) - 895054..895965 (-) 912 WP_025650228.1 trypsin-like serine peptidase -
  BK055_RS04570 (BK055_04570) - 896110..896262 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  BK055_RS04575 (BK055_04575) - 896386..896655 (+) 270 WP_003155492.1 YfhJ family protein -
  BK055_RS04580 (BK055_04580) - 896787..897314 (+) 528 WP_017419151.1 SH3 domain-containing protein -
  BK055_RS04585 (BK055_04585) - 897400..897735 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.15 Da        Isoelectric Point: 6.2729

>NTDB_id=202787 BK055_RS04545 WP_022552784.1 892212..893003(+) (recX) [Bacillus velezensis strain 9912D]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDDQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=202787 BK055_RS04545 WP_022552784.1 892212..893003(+) (recX) [Bacillus velezensis strain 9912D]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGATCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment