Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BK055_RS01775 Genome accession   NZ_CP017775
Coordinates   334092..334529 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 329092..339529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS01750 (BK055_01750) - 330112..331248 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  BK055_RS01755 (BK055_01755) - 331263..331697 (+) 435 WP_014416871.1 RDD family protein -
  BK055_RS01760 (BK055_01760) - 331814..332092 (+) 279 WP_263612330.1 YckD family protein -
  BK055_RS01765 (BK055_01765) - 332196..333632 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  BK055_RS01770 (BK055_01770) nin/comJ 333673..334071 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  BK055_RS01775 (BK055_01775) nucA/comI 334092..334529 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BK055_RS01780 (BK055_01780) hxlB 334860..335417 (-) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  BK055_RS01785 (BK055_01785) hxlA 335414..336049 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  BK055_RS01790 (BK055_01790) - 336281..336643 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=202782 BK055_RS01775 WP_003156588.1 334092..334529(-) (nucA/comI) [Bacillus velezensis strain 9912D]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=202782 BK055_RS01775 WP_003156588.1 334092..334529(-) (nucA/comI) [Bacillus velezensis strain 9912D]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment