Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DN94_00765 Genome accession   CP007565
Coordinates   136493..137218 (+) Length   241 a.a.
NCBI ID   AHX74344.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 131493..142218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_00735 - 132226..132735 (+) 510 AHX74338.1 hydrolase -
  DN94_00740 - 132728..133249 (+) 522 AHX74339.1 GNAT family acetyltransferase -
  DN94_00745 - 133258..134565 (+) 1308 AHX74340.1 transporter -
  DN94_00750 - 134632..134925 (-) 294 AHX74341.1 hypothetical protein -
  DN94_00755 - 134922..135341 (-) 420 AHX74342.1 histidine triad protein -
  DN94_00760 - 135682..136185 (+) 504 AHX74343.1 hypothetical protein -
  DN94_00765 pptA 136493..137218 (+) 726 AHX74344.1 multidrug ABC transporter ATP-binding protein Regulator
  DN94_00770 pptB 137220..138254 (+) 1035 AHX74345.1 multidrug ABC transporter permease Regulator
  DN94_00775 - 138312..139112 (+) 801 AHX74346.1 aminoglycoside phosphotransferase -
  DN94_00780 - 139102..139737 (+) 636 AHX74347.1 tRNA (guanine-N7)-methyltransferase -
  DN94_00790 - 140321..140704 (+) 384 AHX74348.1 ribosome maturation factor RimP -
  DN94_00795 - 140731..141891 (+) 1161 AHX74349.1 transcription elongation factor NusA -
  DN94_00800 - 141913..142209 (+) 297 AHX74350.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26863.31 Da        Isoelectric Point: 4.5704

>NTDB_id=20278 DN94_00765 AHX74344.1 136493..137218(+) (pptA) [Streptococcus agalactiae strain 138spar]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKVKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=20278 DN94_00765 AHX74344.1 136493..137218(+) (pptA) [Streptococcus agalactiae strain 138spar]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGCATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAGCTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGTAAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.406

99.17

0.768
  pptA Streptococcus salivarius strain HSISS4

76.987

99.17

0.763

Multiple sequence alignment