Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LPB68_RS13375 Genome accession   NZ_CP017770
Coordinates   2911589..2912542 (+) Length   317 a.a.
NCBI ID   WP_068660410.1    Uniprot ID   A0A162RHF1
Organism   Paenibacillus crassostreae strain LPB0068     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2906589..2917542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB68_RS13355 (LPB68_13355) - 2907553..2908500 (+) 948 WP_068660418.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LPB68_RS13360 (LPB68_13360) ald 2908589..2909716 (-) 1128 WP_068660416.1 alanine dehydrogenase -
  LPB68_RS13365 (LPB68_13365) - 2909921..2910160 (+) 240 WP_068660414.1 aspartyl-phosphate phosphatase Spo0E family protein -
  LPB68_RS22345 - 2910253..2910384 (-) 132 WP_082865795.1 DUF4023 domain-containing protein -
  LPB68_RS13370 (LPB68_13370) - 2910430..2911323 (-) 894 WP_068660412.1 C40 family peptidase -
  LPB68_RS13375 (LPB68_13375) ceuB 2911589..2912542 (+) 954 WP_068660410.1 ABC transporter permease Machinery gene
  LPB68_RS13380 (LPB68_13380) - 2912539..2913483 (+) 945 WP_068660408.1 iron chelate uptake ABC transporter family permease subunit -
  LPB68_RS13385 (LPB68_13385) - 2913480..2914238 (+) 759 WP_068660406.1 ABC transporter ATP-binding protein -
  LPB68_RS13390 (LPB68_13390) - 2914395..2915402 (+) 1008 WP_068660404.1 siderophore ABC transporter substrate-binding protein -
  LPB68_RS13395 (LPB68_13395) - 2915577..2916674 (-) 1098 WP_068660402.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35270.83 Da        Isoelectric Point: 10.2213

>NTDB_id=202754 LPB68_RS13375 WP_068660410.1 2911589..2912542(+) (ceuB) [Paenibacillus crassostreae strain LPB0068]
MKKRYLLIILIIFSFISLFIGVKDISPLDLFHLSDSQMQTLTVSRLPRLISIIIAGMSMSIVGLIMQQLTRNKFVSPTTA
GTMDSARFGILVAMMLFTNASSLLKISIAFIFALIGTFIFMKILDKVKYKDAIFIPLVGLMFGNVVGSITTFFAYKNDLI
QNMSSWLQGDFSMILKGRYEMLYLSIPLLIIAYIFANRFTIAGMGEDFARNLGLNYKQVVNLGLIIVAAVSSVVILTVGM
IPFLGLIVPNIVAIYQGDHLKKSLMFTALLGPIFLLFCDILGRLIIYPYEIPIGMTVGVIGSAIFIYLLMRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=202754 LPB68_RS13375 WP_068660410.1 2911589..2912542(+) (ceuB) [Paenibacillus crassostreae strain LPB0068]
ATGAAAAAGAGATATTTACTAATTATACTAATCATTTTTTCATTCATTTCACTTTTTATTGGTGTAAAGGATATTTCTCC
ATTGGATCTATTCCACCTCTCAGACAGTCAAATGCAAACCTTAACAGTCAGCCGCTTACCACGTTTAATCAGTATCATTA
TCGCTGGTATGAGTATGAGTATTGTAGGGTTAATTATGCAACAGTTAACACGTAATAAATTTGTATCTCCAACAACAGCA
GGAACGATGGATTCTGCAAGATTTGGTATTCTCGTTGCCATGATGTTATTCACAAACGCGTCTTCTCTTCTAAAAATATC
GATAGCCTTTATCTTTGCGCTGATCGGTACTTTCATCTTTATGAAAATACTTGATAAGGTGAAATACAAGGATGCGATTT
TCATTCCGCTTGTAGGACTTATGTTCGGGAATGTGGTCGGATCGATTACAACCTTCTTCGCTTATAAGAATGATCTCATT
CAGAATATGTCGTCATGGTTACAAGGCGATTTCTCTATGATTCTAAAAGGCCGATATGAGATGCTATATTTAAGTATTCC
ACTTCTCATCATCGCCTACATATTTGCTAATCGATTCACGATTGCAGGAATGGGGGAGGATTTCGCTAGGAACTTAGGAT
TGAACTATAAGCAAGTTGTGAATCTTGGACTTATCATAGTAGCAGCGGTGTCTTCTGTTGTCATCCTAACGGTCGGAATG
ATTCCGTTCCTAGGGCTGATTGTGCCGAATATCGTTGCCATCTATCAAGGGGATCATTTGAAGAAAAGTCTTATGTTCAC
GGCTTTATTAGGACCAATATTCTTATTGTTCTGTGACATACTAGGAAGATTGATTATATATCCTTATGAAATACCTATTG
GAATGACGGTGGGTGTCATCGGGAGTGCAATCTTTATTTACTTACTTATGAGAAGAAAGGCATATGCATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A162RHF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.591

98.738

0.549

Multiple sequence alignment