Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LPB68_RS03980 Genome accession   NZ_CP017770
Coordinates   821084..822808 (-) Length   574 a.a.
NCBI ID   WP_068657678.1    Uniprot ID   -
Organism   Paenibacillus crassostreae strain LPB0068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816084..827808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB68_RS03955 (LPB68_03955) - 816483..817214 (+) 732 WP_068657689.1 ZIP family metal transporter -
  LPB68_RS03960 (LPB68_03960) - 817239..818069 (-) 831 WP_068657687.1 stalk domain-containing protein -
  LPB68_RS23330 (LPB68_03965) - 818265..818492 (+) 228 WP_068657686.1 hypothetical protein -
  LPB68_RS03970 (LPB68_03970) spo0A 818621..819424 (-) 804 WP_068657685.1 sporulation transcription factor Spo0A -
  LPB68_RS03975 (LPB68_03975) spoIVB 819633..820967 (-) 1335 WP_068657683.1 SpoIVB peptidase -
  LPB68_RS03980 (LPB68_03980) recN 821084..822808 (-) 1725 WP_068657678.1 DNA repair protein RecN Machinery gene
  LPB68_RS03985 (LPB68_03985) ahrC 822847..823296 (-) 450 WP_068657677.1 transcriptional regulator AhrC/ArgR -
  LPB68_RS03990 (LPB68_03990) - 823325..823807 (-) 483 WP_068657676.1 hypothetical protein -
  LPB68_RS03995 (LPB68_03995) - 823874..824716 (-) 843 WP_068657672.1 TlyA family RNA methyltransferase -
  LPB68_RS04000 (LPB68_04000) dxs 824745..826652 (-) 1908 WP_068658646.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LPB68_RS04005 (LPB68_04005) - 826757..827662 (-) 906 WP_068657669.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65235.47 Da        Isoelectric Point: 5.1491

>NTDB_id=202737 LPB68_RS03980 WP_068657678.1 821084..822808(-) (recN) [Paenibacillus crassostreae strain LPB0068]
MLVTLSIRNLAVIESVDVHFYSGFHVLTGETGAGKSIIIDALGLLAGGRGSADLIRYGCDKAEIEALFELQEGHPVWDAL
IKIGIECNHEEYLVIRREITSQGKSASRINGQLVNLTMLREVGEQLVNIHGQHEHQSLLRPERHLYLLDTYGEHIIGPLK
ASYQEKYSVFVKVEKELRELQSTSQKSFQMLDLYRFQLEEIAVAQLKPGEDEWLAEERVKLSHSEKMMDSVSGAYNILNG
QHGVSYVSSAVSLLKDIVNYDENGLKPILEQLQSAYFQLEDAAFQIRDYRENIEFNPERLEEVEHRLDLIITLRRKYGDS
VEQIIEYYDKIKKESDLLENKDEHVEKLIQRRDELLVGLLQVAYELSEARKMCSADLASQVESELKDLQMERTTLKVKHD
LLEDPRGYEVEGYKVRLTKQGMDNVEFMISPNPGEPLRPLGKIASGGELSRIMLAMKTIFARHDRIPVLIFDEVDTGVSG
RAAQSIAEKLFKLSDSCQVFSITHLPQVACMADHQYLIEKNIIDGRTMTSVDNLSDEGRIEELARMLGGVEITTKTRHHA
QEMLKLAEARKAVR

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=202737 LPB68_RS03980 WP_068657678.1 821084..822808(-) (recN) [Paenibacillus crassostreae strain LPB0068]
ATGTTAGTAACTTTGTCCATTCGAAATTTAGCAGTTATTGAATCGGTTGACGTACATTTTTATTCGGGATTTCATGTCCT
TACAGGAGAGACTGGTGCTGGTAAATCAATCATCATCGATGCTCTTGGTCTATTAGCAGGAGGAAGAGGATCTGCTGATC
TTATTCGTTATGGATGTGATAAGGCTGAGATTGAAGCATTATTTGAGCTGCAGGAAGGCCACCCCGTGTGGGATGCACTA
ATTAAGATTGGTATTGAATGTAATCATGAGGAGTATTTAGTTATCCGACGTGAAATTACATCTCAAGGTAAGAGTGCTTC
TAGAATTAACGGACAGCTTGTGAATCTTACGATGCTGCGTGAAGTTGGAGAGCAATTAGTTAATATTCACGGACAACATG
AGCATCAGAGCTTGCTTCGACCGGAAAGACATTTATATCTTCTAGATACATATGGTGAGCATATTATCGGACCACTAAAG
GCGAGTTATCAGGAGAAATATTCTGTTTTTGTCAAAGTTGAAAAGGAATTGCGAGAGCTGCAAAGTACTAGTCAAAAGTC
ATTTCAGATGCTAGATTTATATCGATTCCAACTGGAGGAAATCGCTGTAGCGCAATTAAAACCTGGTGAAGATGAATGGT
TAGCGGAGGAAAGGGTCAAGCTATCTCATAGTGAGAAAATGATGGATTCCGTATCAGGGGCATACAATATTCTGAATGGA
CAACATGGCGTGAGTTATGTAAGCTCTGCTGTCTCATTGCTTAAAGACATAGTTAATTATGATGAGAATGGGTTAAAACC
TATACTTGAGCAACTACAATCTGCTTATTTCCAGCTTGAAGATGCCGCTTTTCAAATAAGGGATTATCGAGAGAATATTG
AATTTAATCCTGAGAGATTGGAAGAAGTTGAACATCGCTTAGACTTAATCATCACGTTACGTAGGAAGTATGGCGACAGT
GTTGAACAGATTATTGAGTATTACGATAAGATCAAAAAGGAAAGTGATTTACTAGAAAATAAAGATGAACATGTGGAGAA
ACTAATTCAACGACGTGATGAACTTCTTGTTGGTTTACTTCAGGTTGCATATGAGTTGAGTGAGGCTAGAAAAATGTGTT
CGGCTGATTTAGCATCCCAGGTAGAAAGTGAACTGAAAGACCTTCAAATGGAACGGACGACACTTAAGGTGAAACATGAT
TTGCTTGAGGATCCACGTGGTTATGAAGTGGAAGGTTATAAGGTACGATTAACGAAGCAAGGGATGGATAATGTTGAATT
TATGATATCCCCTAACCCTGGAGAACCATTAAGACCCCTTGGTAAAATTGCGTCAGGTGGGGAACTTTCAAGAATAATGT
TGGCTATGAAGACGATATTCGCTCGACATGATCGAATCCCAGTACTTATCTTTGATGAAGTTGATACTGGAGTGAGCGGT
AGAGCCGCCCAATCCATTGCAGAGAAGCTCTTTAAGTTATCTGATAGTTGTCAAGTATTCTCCATTACGCATTTACCTCA
GGTGGCATGTATGGCGGATCACCAATATTTAATCGAAAAGAACATTATAGATGGACGAACCATGACAAGTGTGGACAATT
TATCTGATGAAGGACGGATTGAAGAACTTGCCCGAATGCTCGGTGGTGTTGAGATTACGACCAAAACACGTCATCATGCT
CAAGAAATGCTAAAGTTAGCTGAAGCTAGAAAAGCTGTCAGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(4-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.751

100

0.481

Multiple sequence alignment